Transcription Factor
| Accessions: | OsARF18 (EEADannot 2023-12-22) |
| Names: | LOC_Os06g47150, Os06g0685700 |
| Organisms: | Oryza sativa Japonica Group |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:ARF |
| Length: | 700 |
| Pfam Domains: | 128-229 B3 DNA binding domain 292-375 Auxin response factor 556-696 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MITFVDSAAKERERESDKCLDPQLWHACAGGMVQMPPVSSKVYYFPQGHAEHAQGHGPVE 60 61 FPGGRVPALVLCRVAGVRFMADPDTDEVFAKIRLVPVRANEQGYAGDADDGIGAAAAAAA 120 121 QEEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSADPPVQTVLAKDVHGVVWKF 180 181 RHIYRGTPRRHLLTTGWSTFVNQKKLVAGDSIVFMRTENGDLCVGIRRAKKGGVGGPEFL 240 241 PPPPPPPPTPAAGGNYGGFSMFLRGDDDGNKMAAAARGKVRARVRPEEVVEAANLAVSGQ 300 301 PFEVVYYPRASTPEFCVKAGAVRAAMRTQWFAGMRFKMAFETEDSSRISWFMGTVSAVQV 360 361 ADPIRWPNSPWRLLQVSWDEPDLLQNVKRVSPWLVELVSNMPAIHLAPFSPPRKKLCVPL 420 421 YPELPIDGQFPTPMFHGNPLARGVGPMCYFPDGTPAGIQGARHAQFGISLSDLHLNKLQS 480 481 SLSPHGLHQLDHGMQPRIAAGLIIGHPAARDDISCLLTIGSPQNNKKSDGKKAPAQLMLF 540 541 GKPILTEQQISLGDAASVDVKKSSSDGNAENTVNKSNSDVSSPRSNQNGTTDNLSCGGVP 600 601 LCQDNKVLDVGLETGHCKVFMQSEDVGRTLDLSVVGSYEELYRRLADMFGIEKAELMSHV 660 661 FYRDAAGALKHTGDEPFSEFTKTARRLNILTDTSGDNLAR |
| Interface Residues: | 133, 135, 140, 141, 142, 144, 185, 186, 187, 188, 190, 191 |
| 3D-footprint Homologues: | 6j9b_A, 6ycq_A, 6fas_B, 7et6_A, 6sdg_B |
| Binding Motifs: | EEAD0068 TGTCrr EEAD0069 GTCTC |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.