Transcription Factor

						

			
Accessions: Q1RLB9 (JASPAR 2024)

			
Names: Q1RLB9_CIOIN, Transcription factor ATBF, Transcription factor protein
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q1RLB9
Length: 1004
Pfam Domains:    64-120 Homeobox domain
  388-444 Homeobox domain
  722-778 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MTWHPKLHCHRKLSSIGSGTLCSRSDSGPRTHHTTSASHLCLVWRMLIGHNLRSRRPQLK   60
  61 IPQRTPRTRFTDFQLQVLQEFFDKNAYPKDDDLDKLSKTLDLSTRVIVVWFQNARQKARK  120
 121 NFEQSQQPHVNISPGQPIQATSYRPVSPVVEEAIAKARLLTQGSKTDLDNFVRKSMNEVG  180
 181 KNIQPKDKQSPSLQESFKTSTRTPSNDSNPQSHSRTSSNTENKEKSNFPCQVCDLSFATI  240
 241 PQWQAHQQVHLAANVASVFGQYGFMYMQGLMGDEQKTEDKKVEEKSVSDSWSNNTDKLGW  300
 301 NGQQPWMKHSIEQKLPNQARTISDDKASTIRSRLVTPPMGGAKRKISTSPTLSHSSSSST  360
 361 SPSMVQNSMMRQKGAYMDERDSLGKDPKRLRTTITPEQLEYLYQQYLVDSSPSRKIIEQI  420
 421 SEAVGLKKRVVQVWFQNTRARERKGQFRSSVARCSSGQVQYKFCQLCRMVFRSKIELDTH  480
 481 MQVRHNEHSSKDEPADKKMRLAIGSPQLSQSPAINRDTVQQDYRKFDNSRSSSDQGNKSM  540
 541 HSMHENAPSPMRLQNQTQKPKQENNFLKESNYNADTARTNHINSLKQLFGGANANTPSTL  600
 601 DLQQKLAALYASRKEVYQSIDPSPLLALQLPTSSTETNQQIVPRSSENISTPPPVNSTSQ  660
 661 KNTSNIAVSSKTGNEQSQDKSFQQDISATHQTSDTAAISPHSPTSKQKFLAYMNEGTYAT  720
 721 PKRYRTQMTSVQVRALKSCFRSYKTPSLTECEVLGSEIGLPKRVIQVWFQNARAKEKKYK  780
 781 LQNPDCQDKYSDQSQLTECPTCFPIVRFSLAAEVREHAFSHIHLQQLMKGSDSGLSNEPR  840
 841 HSYNSSPSSSHGSFDNSYMADQPMSDTQHSEQFLFNHVQSSAAEPSSTSSLTPSSAEYSC  900
 901 AQTMSRLSSAESLNAADTAMHEASGSTTPDKEEADHSSEYTNALMSNPALLQQYQQAVQK  960
 961 MMTGGNEVINDADAQSMHQARLQAFQRSLYKMLNLPHTSAAGGR
Interface Residues: 64, 65, 66, 67, 69, 105, 106, 108, 109, 112, 113, 116, 117, 120, 388, 391, 429, 432, 433, 436, 437, 439, 440, 441, 722, 723, 724, 725, 766, 767, 770, 771, 774, 775, 778, 787
3D-footprint Homologues: 8pmf_A, 1puf_A, 1ig7_A, 5zjt_E, 3d1n_M, 1zq3_P, 1fjl_B, 2lkx_A, 2ld5_A, 5flv_I, 4cyc_A, 2r5y_A, 1puf_B, 7psx_B, 6m3d_C, 5jlw_D, 8osb_E, 4xrs_G, 2d5v_B, 8eml_B, 1b72_A, 3rkq_B, 1mnm_C, 1k61_B, 6fqp_B, 1du0_A, 6fqq_E, 3cmy_A, 8ejp_B, 5hod_A, 8ik5_C, 1au7_A, 6ryd_F, 1le8_A, 6wig_A, 6a8r_A, 5zfz_A, 1jgg_B, 3lnq_A, 7q3o_C, 6es3_K, 2hdd_A, 9b8u_A, 2hos_A, 1nk2_P, 3a01_E, 7xrc_C, 1e3o_C, 2xsd_C, 8g87_X, 8bx1_A, 4qtr_D, 1o4x_A
Binding Motifs: MA1844.1 wwwwwaatTAATTamwwwww
MA1844.2 tTAATT
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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