Transcription Factor
| Accessions: | D9HNV4 (JASPAR 2024), AuxinResponseFactor27 (EEADannot 2023-12-22) |
| Names: | D9HNV4_MAIZE, ARF27, GRMZM2G160005 |
| Organisms: | Zea mays |
| Libraries: | JASPAR 2024 1, EEADannot 2023-12-22 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Uniprot: | D9HNV4 |
| Notes: | family:ARF |
| Length: | 1053 |
| Pfam Domains: | 127-228 B3 DNA binding domain 253-335 Auxin response factor 932-1028 AUX/IAA family |
| Sequence: (in bold interface residues) | 1 MKDHGSGGVTPSPAEGEKKPINSELWHACAGPLVSLPPVGSLVVYFPQGHSEQVAASMHK 60 61 ELDTVPSYPSLPSKLICKLLSLTLHADSETDEVYAQMMLQPVNKYDRDAMLASELGLKQN 120 121 KQPTEFFCKTLTASDTSTHGGFSVPRRAAEKIFPPLDFTMQPPAQELIAKDLHDISWKFR 180 181 HIYRGQPKRHLLTTGWSVFVSTKRLLAGDSVLFIRDEKSQLLLGIRRASRPQPALSSSVL 240 241 SSDSMHIGILAAAAHAAANSSPFTIFYNPRASPSEFVIPLAKYNKALYTQVSLGMRFRML 300 301 FETEDSGVRRYMGTITGIGDLDPLRWKNSHWRNLQVGWDESTASERRTRVSIWEIEPVAT 360 361 PFYICPPPFFRPKLPKQAGMPDDENEVESAFKRAMPWLADDFALKDVQNALFPGLSLVQW 420 421 MAMQQNPQMLATASPAVQSQYLTSNALGMQDGIGSVSEDPTKRLTMQAQNIGLPNLQAGS 480 481 KVDHPAITPLAQHQQQPHHVLQQQQVQPLQQSSAILQQQQAQLLQQNAIHLQQQQEQLQR 540 541 QQSQPQQQFKATACLQSSDQHKLKEQQPSGGQAASQVHLLNQILQPSSSQLQQLGLPKSP 600 601 TQRPGLPSLTTMGSLQQSQLPQTPQPQQTAEYHQALLQSQQPQLQQLSQSELQLQLLQKI 660 661 QQQNLLSQLNPQHQSQLIQQLSQKSQEILQQQVLQHQFGGADAMGQLKHLQQTPLNHNTG 720 721 SLPPQQLVRSHSALTESEEPSSSTVPSGSRISPINSFSRANQGTRNLPEMPATPHIEHLL 780 781 QEIQSKTDNRIKNDIQGSKETVHAPNRHLASDQLDASSATSFCLDESPREGFSFPPVCLD 840 841 NNVQVDPRENFLIAENVDTLMPDALLSRGMSSGKGICNLPSGQRDHRDVENELSSAAFSS 900 901 QSFGVPDMSFKPGCSSDVAVADGGMASQGLWNSQTQRMRTFTKVQKRGSVGRSIDITRYR 960 961 GYEDLRHDLACMFGIQGQLEDPYRTDWKLVYVDHENDILLVGDDPWEEFVSCVKSIKILS 1020 1021 SVEVQQMSLDGDLGCIPQTQACSASDDANAWRA |
| Interface Residues: | 132, 134, 139, 140, 141, 143, 182, 184, 185, 186, 187, 189, 190 |
| 3D-footprint Homologues: | 6j9b_A, 7et6_A, 6sdg_B, 6ycq_A, 6fas_B |
| Binding Motifs: | MA1691.1 smrGCAGACATga EEAD0034 CMGACA MA1691.2 GCAGACAT |
| Binding Sites: | MA1691.1.1 MA1691.1.10 MA1691.1.11 MA1691.1.12 MA1691.1.13 MA1691.1.14 MA1691.1.15 MA1691.1.16 MA1691.1.17 MA1691.1.18 MA1691.1.19 / MA1691.1.6 MA1691.1.2 MA1691.1.20 MA1691.1.3 MA1691.1.4 MA1691.1.5 MA1691.1.6 MA1691.1.3 / MA1691.1.7 MA1691.1.4 / MA1691.1.8 MA1691.1.5 / MA1691.1.9 MA1691.1.10 MA1691.1.11 MA1691.1.12 MA1691.1.13 MA1691.1.14 MA1691.1.15 MA1691.1.16 MA1691.1.17 MA1691.1.18 MA1691.1.19 MA1691.1.20 MA1691.1.7 MA1691.1.8 MA1691.1.9 MA1691.2.1 / MA1691.2.14 / MA1691.2.4 / MA1691.2.5 MA1691.2.10 / MA1691.2.11 / MA1691.2.13 / MA1691.2.16 / MA1691.2.18 / MA1691.2.2 / MA1691.2.20 MA1691.2.12 MA1691.2.15 / MA1691.2.3 MA1691.2.17 / MA1691.2.19 MA1691.2.6 MA1691.2.7 MA1691.2.8 MA1691.2.9 |
| Publications: | Boer D.R, Freire-Rios A, van den Berg W.A, Saaki T, Manfield I.W, Kepinski S, López-Vidrieo I, Franco-Zorrilla J.M, de Vries S.C, Solano R, Weijers D, Coll M. Structural basis for DNA binding specificity by the auxin-dependent ARF transcription factors. Cell 156:577-89 (2014). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.