Transcription Factor

						

			
Accessions: T139471_1.02 (CISBP 1.02)

			
Names: Smp_174320, T139471_1.02;
Organisms: Schistosoma mansoni
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Runt
Length: 702
Pfam Domains:    10-140 Runt domain
Sequence: 
(in bold interface residues)		   1 MSDILLAEYTLKRALREHTTDLAPTSNPHLLCTPLPKHWRSNKSLPSQFRVVSLIPVPDG   60
  61 TRVTVTAGNEERPCAELKNPVTIMHGHEARFSDLRFLGRSGRGKSFNITITMXTTPPIVA  120
 121 LYARAIKVTVDGPRVPRSKYSTVRTGRIYKEMKRLGSRHQNLCEHSTINRSFPSRNNYPI  180
 181 PEDLQRNKMKRATHEINSHGFSDKFKKHSILSTRFSPPMLIREELAPITSETVNITNNPT  240
 241 KSLKIPRSTQKTNDRSSPTESSIKSFSSISDTSGIGFSPYESTYLLSSINEAYAKLLARQ  300
 301 AYLDKMTFNATTTSNNTDLLTNIAINTPGFATTIPQNVGNTERSKITNPMNPSTQMKNTY  360
 361 IPHALETFSPVSLFSTLLHCNNIDSRISSNFIRDKHQQDVNYTTTAYPSMLNLEAARHSI  420
 421 NSVKTPFQLQEAHGTVTPIRINYLDTSGGNNISNNSQTDTAQNHLDCLRSVPQNSASCDR  480
 481 LCQSNDSSSSLLSSFLYSNMTSELNPTKLNINEGKTNVQPGYSKWEEFDYRHYYNAFATF  540
 541 LSGMLNMSGINSNCLGTKKLNETTCVNDNFRNINSSFDKMKWNRHVLNNKKNITSCLNNN  600
 601 STDMDSTLNKTPDKNDSSNHVLSIEHLLDLNTRGTTKNDTNRSKHDNKHMSADECSPDYS  660
 661 NFMSTPNNKHNYVNYFPQTVPDPLLIKSILARHLIENKSFRV
Interface Residues: 40, 102, 130, 131, 134, 137
3D-footprint Homologues: 6vg8_D, 3wts_A, 6vgd_D, 4l0y_A, 4l18_E
Binding Motifs: M1541_1.02 awAACCGCAay
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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