Transcription Factor

						

			
Accessions: T060976_1.02 (CISBP 1.02)

			
Names: NCU09333, T060976_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 735
Sequence: 
(in bold interface residues)		   1 MSNPRRRPAGGLTLKTNMLLQKGATFHSPTTPASGDSSERVFVPPSLPRRSHTNLDDVID   60
  61 SRCRRVALALDAIERQLASSNDTFASASRSDKCIPPPRGLLERNLDSPIMPKEVEPERRM  120
 121 LRPRTRRSSRHHDSDSGLGSSIASTSEKDASSKAKTTRTSAVARSATARAASTPDLPGLG  180
 181 DRATNRIVEYILKPLLAKPNLKEFHSLVLECPKKIQEKEILCLRDLEKTLILVAPERTKA  240
 241 AGSYLDFCLTTIDCLQATVQHLGDRELTRPRDLPYTSGYFVDLVDQFYNYARQIAESNKT  300
 301 KEGANDMDIDPTDQIKIHGGPHINGRLSELVRVKKNGQAISLATGLPVDLCDKAPETPVN  360
 361 FKRSQSEEALDEEEVMRSMARRKKNASPEELAPKRCREPGCNKEFKRPCDLTKHEKTHSR  420
 421 PWKCPVKTCKYHEYGWPTEKEMDRHHNDKHSSAPPMYECLFKPCPYKSKRESNCKQHMEK  480
 481 AHGWTYVRTKTNGKKPSTLPSLGPDSGHPTPQLQNIGTPSSDRSMSIATPSDDWNAGLYQ  540
 541 TNIEFPAYAPEFNFNTIPQQLELDYSPIDNGTPSPDSGMDHNSAYQDLNEFTLIDDIYGA  600
 601 TVQLPNQVISPFYLKDMGQHLGAYTAPDLCQPHPAHISPIGQGNTMLFTPPTSLGEVDEG  660
 661 FEDHDFAMSNCNNVPGDFILYPPTTDAYSKPTFTESLFANVDIPSMAAGYSQPSSQDILH  720
 721 AYQGDWTSHDMNAYF
Interface Residues: 383, 406, 407, 409, 410, 412, 413, 415, 416, 419, 432, 433, 436, 437, 438, 439, 440, 441, 444, 445, 448, 470, 471, 472, 473, 475, 476
3D-footprint Homologues: 7ysf_A, 6jnm_A, 1ubd_C, 5v3j_F, 1f2i_J, 2gli_A, 6u9q_A, 6blw_A, 6e94_A, 1tf3_A, 1tf6_A, 6a57_A, 2jpa_A, 2wbs_A
Binding Motifs: M0486_1.02 ywAGGCakcw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.