Transcription Factor

						

			
Accessions: SNAI2_DBD (HumanTF 1.0)

			
Names: Neural crest transcription factor Slug, Protein snail homolog 2, SNAI2, SNAI2_HUMAN, Zinc finger protein SNAI2
Organisms: Homo sapiens
Libraries: HumanTF 1.0 1
1 Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Uniprot: O43623
Notes: Ensembl ID: ENSG00000019549; DNA-binding domain sequence; TF family: znfC2H2; Clone source: MGC
Length: 160
Pfam Domains:     20-44 C2H2-type zinc finger
    20-42 Zinc finger, C2H2 type
    20-41 C2H2-type zinc finger
    51-73 C2H2-type zinc finger
    51-73 Zinc finger, C2H2 type
    51-73 C2H2-type zinc finger
    65-88 Zinc-finger double domain
    78-99 Zinc finger, C2H2 type
    78-99 C2H2-type zinc finger
    79-99 C2H2-type zinc finger
   92-115 Zinc-finger double domain
  105-127 C2H2-type zinc finger
  105-127 Zinc finger, C2H2 type
  105-127 C2H2-type zinc finger
  105-125 Zinc-finger of C2H2 type
  119-144 Zinc-finger double domain
  133-149 C2H2-type zinc finger
  133-154 Zinc finger, C2H2 type
  133-153 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MAERLQSKLSDPHAIEAEKFQCNLCNKTYSTFSGLAKHKQLHCDAQSRKSFSCKYCDKEY   60
  61 VSLGALKMHIRTHTLPCVCKICGKAFSRPWLLQGHIRTHTGEKPFSCPHCNRAFADRSNL  120
 121 RAHLQTHSDVKKYQCKNCSKTFSRMSLLHKHEESGCCVAH
Interface Residues: 30, 31, 33, 34, 37, 41, 61, 62, 63, 64, 65, 67, 68, 70, 71, 74, 87, 88, 89, 90, 91, 93, 94, 95, 115, 116, 117, 118, 119, 120, 121, 122, 123, 126, 143, 144, 145, 146, 147, 149, 150
3D-footprint Homologues: 7w1m_H, 5yel_A, 6wmi_A, 8ssq_A, 5kkq_D, 8ssu_A, 2i13_A, 8gh6_A, 1ubd_C, 6jnm_A, 7n5w_A, 5ei9_F, 5kl3_A, 5und_A, 1g2f_F, 6ml4_A, 4x9j_A, 6blw_A, 8h9h_G, 7eyi_G, 6e94_A, 7ysf_A, 2gli_A, 6a57_A, 2jpa_A, 3uk3_C, 1tf3_A, 8cuc_F, 7y3l_A, 6u9q_A, 1mey_C, 7txc_E, 1f2i_J, 5k5i_A, 2kmk_A, 1tf6_A, 5v3j_F, 1llm_D, 2wbs_A, 4m9v_C, 2lt7_A, 7y3m_I, 8gn3_A, 2drp_D, 5yj3_D, 5k5l_F
Binding Motifs: SNAI2_DBD rrCAGGTGy
			
Publications: Jolma A, Yan J, Whitington T, Toivonen J, Nitta KR, Rastas P, Morgunova E, Enge M, Taipale M, Wei G, Palin K, Vaquerizas JM, Vincentelli R, Luscombe NM, Hughes TR, Lemaire P, Ukkonen E, Kivioja T, Taipale J. DNA-Binding Specificities of Human Transcription Factors. Cell. 2013 Jan 17;152(1-2):327-39. [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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