Transcription Factor
Accessions: | T154025_1.02 (CISBP 1.02), Q9SUS1 (JASPAR 2024), T17203 (AthalianaCistrome v4_May2016) |
Names: | T154025_1.02;, WRKY29, Probable WRKY transcription factor 29, WRK29_ARATH, WRKY DNA-binding protein 29, AT4G23550, T17203; |
Organisms: | Arabidopsis thaliana |
Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
Notes: | experiment type:PBM, family:WRKY, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq |
Length: | 304 |
Pfam Domains: | 134-192 WRKY DNA -binding domain |
Sequence: (in bold interface residues) | 1 MDEGDLEAIVRGYSGSGDAFSGESSGTFSPSFCLPMETSSFYEPEMETSGLDELGELYKP 60 61 FYPFSTQTILTSSVSLPEDSKPFRDDKKQRSHGCLLSNGSRADHIRISESKSKKSKKNQQ 120 121 KRVVEQVKEENLLSDAWAWRKYGQKPIKGSPYPRSYYRCSSSKGCLARKQVERNPQNPEK 180 181 FTITYTNEHNHELPTRRNSLAGSTRAKTSQPKPTLTKKSEKEVVSSPTSNPMIPSADESS 240 241 VAVQEMSVAETSTHQAAGAIEGRRLSNGLPSDLMSGSGTFPSFTGDFDELLNSQEFFSGY 300 301 LWNY |
Interface Residues: | 141, 142, 144, 145, 156 |
3D-footprint Homologues: | 7z0u_A |
Binding Motifs: | M1692_1.02 wwrGTCaamg M0823 / MA1298.1 aaAAGTCAACk M0796 aaAAGTCAACkwt MA1298.2 aAAGTCAAC |
Binding Sites: | MA1298.1.5 MA1298.1.18 MA1298.1.19 MA1298.1.20 MA1298.1.12 MA1298.1.1 MA1298.1.11 MA1298.1.14 MA1298.1.3 MA1298.1.16 / MA1298.1.6 MA1298.1.7 MA1298.1.15 MA1298.1.10 MA1298.1.13 MA1298.1.17 MA1298.1.2 MA1298.1.4 MA1298.1.8 MA1298.1.9 MA1298.2.1 MA1298.2.10 MA1298.2.11 MA1298.2.12 MA1298.2.13 MA1298.2.14 MA1298.2.15 MA1298.2.16 / MA1298.2.6 MA1298.2.17 MA1298.2.18 MA1298.2.19 MA1298.2.2 MA1298.2.20 MA1298.2.3 MA1298.2.4 MA1298.2.5 MA1298.2.7 MA1298.2.8 MA1298.2.9 |
Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
Related annotations: | PaperBLAST |
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