Transcription Factor
| Accessions: | T22029 (AthalianaCistrome v4_May2016), Q9FH80 (JASPAR 2024) |
| Names: | AT5G45300, BAM8, T22029;, 1,4-alpha-D-glucan maltohydrolase, BAM8_ARATH, Beta-amylase 2, Beta-amylase 8, EC 3.2.1.2 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:BES1 |
| Length: | 689 |
| Pfam Domains: | 82-232 Plant protein of unknown function (DUF822) 260-646 Glycosyl hydrolase family 14 |
| Sequence: (in bold interface residues) | 1 MHTLNNTITTTTGSQDPNLDPIPDPDQFPNRNRNQPQSRRPRGFAAAAAAASIAPTENDV 60 61 NNGNIAGIGGGEGSSGGGGGGGGKGKREREKEKERTKLRERHRRAITSRMLAGLRQYGNF 120 121 PLPARADMNDVIAALAREAGWSVEADGTTYRQSQQPNHVVQFPTRSIESPLSSSTLKNCA 180 181 KAAIESQQHSVLRNDEKLAPVSLDSIGIAESDHPGNGRYTSVSPITSVGCLEANQLIQDV 240 241 HSAEQCNDFTESFYVPVYAMLPVGIIDNFGQLVDPEGVRQELSYMKSLNVDGVVIDCWWG 300 301 IVEGWNPQKYVWSGYRELFNLIRDFKLKLQVVMAFHEYGGNASGNVMISLPQWVLKIGKD 360 361 NPDIFFTDREGRRSFECLNWSIDKERVLHGRTGIEVYFDFMRSFRSEFDDLFVEGLITAV 420 421 EIGLGASGELKYPSFPERMGWIYPGIGEFQCYDKYSQLSLQKEAKSRGFTFWGKGPENAG 480 481 QYSSHPHETVFFQERGEYDSYYGRFFLNWYSQLLIGHAENVLSLANLAFEETKIIVKIPA 540 541 IYWSYKTASHAAELTAGYYNPSNRDGYSLVFETLKKYSVTVKFVCPGPQMSPNAHEEALA 600 601 DPEGLSWQVINAAWDKGLQIGGENAITCFDRDGCMRLIDIAKPRNHPDGYHFSFFTYRQP 660 661 SPLVQGSTCFPDLDYFIKRMHGDIRDKQF |
| Interface Residues: | 104, 105, 106, 108, 109, 126, 145, 146, 147, 150 |
| 3D-footprint Homologues: | 5i2d_R, 4fcy_B |
| Binding Motifs: | M0154 yCACACGTGysaamt M0155 arttsrCACGTGTsr MA2014.1 ytCACACGTGysaa MA2014.2 CACACGTGy MA2375.1 srCACGTGTGr |
| Binding Sites: | MA2014.1.5 MA2014.1.6 MA2014.1.3 / MA2014.1.4 MA2014.1.1 MA2014.1.10 MA2014.1.11 MA2014.1.12 MA2014.1.13 MA2014.1.14 MA2014.1.15 MA2014.1.16 MA2014.1.17 MA2014.1.18 MA2014.1.19 MA2014.1.2 MA2014.1.20 MA2014.1.7 MA2014.1.8 MA2014.1.9 MA2014.2.1 / MA2014.2.2 MA2014.2.10 MA2014.2.11 MA2014.2.12 MA2014.2.13 MA2014.2.14 / MA2014.2.16 / MA2014.2.17 / MA2014.2.18 / MA2014.2.19 / MA2014.2.3 / MA2014.2.4 / MA2014.2.7 / MA2014.2.8 MA2014.2.15 MA2014.2.20 MA2014.2.5 MA2014.2.6 MA2014.2.9 |
| Publications: | Reinhold H, Soyk S, Simková K, Hostettler C, Marafino J, Mainiero S, Vaughan CK, Monroe JD, Zeeman SC. β-amylase-like proteins function as transcription factors in Arabidopsis, controlling shoot growth and development. Plant Cell 23:1391-403 (2011). [Pubmed] Yu X, Li L, Zola J, Aluru M, Ye H, Foudree A, Guo H, Anderson S, Aluru S, Liu P, Rodermel S, Yin Y. A brassinosteroid transcriptional network revealed by genome-wide identification of BESI target genes in Arabidopsis thaliana. Plant J 65:634-46 (2011). [Pubmed] |
| Related annotations: | PaperBLAST |
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