Transcription Factor
| Accessions: | Q4H3H7 (JASPAR 2024) |
| Names: | Q4H3H7_CIOIN |
| Organisms: | Ciona intestinalis |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | Q4H3H7 |
| Length: | 845 |
| Pfam Domains: | 190-271 Fork head domain |
| Sequence: (in bold interface residues) | 1 MSDLTNIDADFQPQARPRSGTWPMNRPSGRRNEDNDVGMKLEATIEEASSQEHLLMEALA 60 61 QPSLVQSIKQEIQEPMGSEFSNGLAGSPSANLVTDFSSILLSGQQSGVNSSNASPNLSFT 120 121 DLSSPQAPFPNTMSSPTQLDTKPVITGVSSTLSVGLHTPVTATSSVDSSLVSNVASKPKT 180 181 TSRKNAWGNMSYADLITQGIESSPDKRLTLAQIYDWMVKNVPYFKDKGDSNSSAGWKNSI 240 241 RHNLSLHSKFKRIQNEGTGKSSWWIINHDAKPGKSPRRRATSMETTNGKYNRSRSKAVAK 300 301 QKAELLKKQKSVTKRDSPTWARSPTSGDAPDFDHPVNKSLINDFRPRASSNASSIGGRTS 360 361 PRHFLPQDLEDDGPPPLSPASYTNASISDLFGPRSDSFSLVDGIDLNSPGSVLQNDLLDS 420 421 IAGMEVMNPPSPQTSERNNPNIYINPTANQDSYQSPMFPQMKNIISPTQQQLSSKNGTNQ 480 481 SRVIVSSPNLASLLQQGITTNAKSPVITAKSRPLPQASDMLPPVARQRANTMPRLQPQPK 540 541 YNMNRQPSGENLMTEPILFTNFARDAQSLSTSPQNVYQPMQNQHYSFNGQQQQQQQNSQQ 600 601 QQVMLGDASNALSSMANQNKTLYELLGQRSSNEMTGKCQQQQIQPITNQRSQDSGVNYNM 660 661 QQQLSLENQPQEEPRSNLNLMGKEKFPSDINLDQHDIFDSGVIDLDQMLQDIGPPSSDGY 720 721 MDFNSYCPQEIPAYTTNVDMESGMDTTMTSSMEPDNNGYNYNMQQQQQQQQQQPQMLQQQ 780 781 QQYQHYMTQTNDNVPQIYLGMDGGMGYPMRGQTGIVMGSTGTPQHFTHHTMRPQSSVGTI 840 841 SDYRL |
| Interface Residues: | 232, 235, 237, 238, 239, 241, 242, 243, 245, 246, 255, 260, 278 |
| 3D-footprint Homologues: | 3l2c_A, 7vox_H, 2hdc_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 7tdx_A, 7yzb_A, 6nce_A, 3qrf_G |
| Binding Motifs: | MA1872.1 wrwaaacATGTTTwyktttw MA1872.2 aacATGTTT |
| Publications: | José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.