Transcription Factor
| Accessions: | T04596 (AthalianaCistrome v4_May2016), Q9M9A3 (JASPAR 2024) |
| Names: | At1g49010, T04596;, Duplicated homeodomain-like superfamily protein, F27J15.20, MYB transcription factor, Q9M9A3_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB-related |
| Length: | 314 |
| Pfam Domains: | 135-179 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MESVVATWSREEEKAFENAIALHCVEEEITEDQWNKMSSMVPSKALEEVKKHYQILLEDV 60 61 KAIENGQVPLPRYHHRKGLIVDEAAAAATSPANRDSHSSGSSEKKPNPGTSGISSSNGGR 120 121 SGGSRAEQERRKGIPWTEEEHRLFLLGLDKFGKGDWRSISRNFVISRTPTQVASHAQKYF 180 181 IRLNSMNRDRRRSSIHDITTVNNQAPAVTGGGQQPQVVKHRPAQPQPQPQPQPQQHHPPT 240 241 MAGLGMYGGAPVGQPIIAPPDHMGSAVGTPVMLPPPMGTHHHHHHHHLGVAPYAVPAYPV 300 301 PPLPQQHPAPSTMH |
| Interface Residues: | 169, 170, 184, 185, 188, 189, 192 |
| 3D-footprint Homologues: | 1vfc_A, 1w0t_A |
| Binding Motifs: | M0584 / MA1186.1 hwwwwyCTTATCywh M0601 dwwdwrGATAAGrwt MA1186.2 wwyCTTATCyw |
| Binding Sites: | MA1186.1.1 MA1186.1.10 MA1186.1.11 MA1186.1.12 MA1186.1.13 MA1186.1.14 MA1186.1.15 MA1186.1.16 MA1186.1.17 MA1186.1.18 MA1186.1.19 MA1186.1.2 MA1186.1.20 MA1186.1.3 MA1186.1.4 MA1186.1.5 MA1186.1.6 MA1186.1.7 MA1186.1.8 MA1186.1.9 MA1186.2.1 MA1186.2.10 MA1186.2.11 MA1186.2.12 MA1186.2.13 MA1186.2.14 MA1186.2.15 MA1186.2.16 MA1186.2.17 MA1186.2.18 MA1186.2.19 MA1186.2.2 MA1186.2.20 MA1186.2.3 MA1186.2.4 MA1186.2.5 MA1186.2.6 MA1186.2.7 MA1186.2.8 MA1186.2.9 |
| Publications: | Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Related annotations: | PaperBLAST |
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