Transcription Factor
| Accessions: | Q93WV0 (JASPAR 2024), T20362 (AthalianaCistrome v4_May2016) |
| Names: | Probable WRKY transcription factor 20, WRK20_ARATH, WRKY DNA-binding protein 20, AT4G26640, T20362;, WRKY20 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:WRKY |
| Length: | 557 |
| Pfam Domains: | 211-268 WRKY DNA -binding domain 380-438 WRKY DNA -binding domain |
| Sequence: (in bold interface residues) | 1 MNPQANDRKEFQGDCSATGDLTAKHDSAGGNGGGGARYKLMSPAKLPISRSTDITIPPGL 60 61 SPTSFLESPVFISNIKPEPSPTTGSLFKPRPVHISASSSSYTGRGFHQNTFTEQKSSEFE 120 121 FRPPASNMVYAELGKIRSEPPVHFQGQGHGSSHSPSSISDAAGSSSELSRPTPPCQMTPT 180 181 SSDIPAGSDQEESIQTSQNDSRGSTPSILADDGYNWRKYGQKHVKGSEFPRSYYKCTHPN 240 241 CEVKKLFERSHDGQITDIIYKGTHDHPKPQPGRRNSGGMAAQEERLDKYPSSTGRDEKGS 300 301 GVYNLSNPNEQTGNPEVPPISASDDGGEAAASNRNKDEPDDDDPFSKRRRMEGAMEITPL 360 361 VKPIREPRVVVQTLSEVDILDDGYRWRKYGQKVVRGNPNPRSYYKCTAHGCPVRKHVERA 420 421 SHDPKAVITTYEGKHDHDVPTSKSSSNHEIQPRFRPDETDTISLNLGVGISSDGPNHASN 480 481 EHQHQNQQLVNQTHPNGVNFRFVHASPMSSYYASLNSGMNQYGQRETKNETQNGDISSLN 540 541 NSSYPYPPNMGRVQSGP |
| Interface Residues: | 217, 218, 219, 221, 222, 233, 387, 388, 389, 391, 392, 403 |
| 3D-footprint Homologues: | 6j4f_F, 6j4g_B, 6j4e_B, 6ir8_A, 7z0u_A |
| Binding Motifs: | M0825 / MA1295.1 dvCKTTGACywww MA1295.2 CKTTGACy |
| Binding Sites: | MA1295.2.14 MA1295.2.6 MA1295.1.19 MA1295.1.1 MA1295.1.10 MA1295.1.11 MA1295.1.12 MA1295.1.13 MA1295.1.14 MA1295.1.15 MA1295.1.16 MA1295.1.17 MA1295.1.18 MA1295.1.2 MA1295.1.20 MA1295.1.3 MA1295.1.4 MA1295.1.5 MA1295.1.6 MA1295.1.7 MA1295.1.8 MA1295.1.9 MA1295.2.10 MA1295.2.5 MA1295.2.1 MA1295.2.11 MA1295.2.12 MA1295.2.13 MA1295.2.15 MA1295.2.16 MA1295.2.17 MA1295.2.18 MA1295.2.19 MA1295.2.2 MA1295.2.20 MA1295.2.3 MA1295.2.4 MA1295.2.7 MA1295.2.8 MA1295.2.9 |
| Publications: | Yu D, Chen C, Chen Z. 2001. Evidence for an important role of WRKY DNA binding proteins in the regulation of NPR1 gene expression. Plant Cell. 13:1527-40. [Pubmed] |
| Related annotations: | PaperBLAST |
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