Transcription Factor

						

			
Accessions: T049094_1.02 (CISBP 1.02)

			
Names: T049094_1.02;, Zscan10
Organisms: Mus musculus
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:C2H2 ZF
Length: 702
Pfam Domains:     38-86 SCAN domain
  301-323 Zinc finger, C2H2 type
  301-323 C2H2-type zinc finger
  316-339 Zinc-finger double domain
  329-351 C2H2-type zinc finger
  329-351 Zinc finger, C2H2 type
  357-379 C2H2-type zinc finger
  357-379 Zinc finger, C2H2 type
  357-376 C2H2-type zinc finger
  403-423 C2H2-type zinc finger
  403-423 Zinc finger, C2H2 type
  403-423 C2H2-type zinc finger
  415-457 Zinc-finger double domain
  447-470 C2H2-type zinc finger
  447-470 Zinc finger, C2H2 type
  447-462 C2H2-type zinc finger
  462-486 Zinc-finger double domain
  476-498 C2H2-type zinc finger
  476-498 Zinc finger, C2H2 type
  493-514 Zinc-finger double domain
  504-526 C2H2-type zinc finger
  504-526 Zinc finger, C2H2 type
  504-513 C2H2-type zinc finger
  519-542 Zinc-finger double domain
  532-554 C2H2-type zinc finger
  532-554 C2H2-type zinc finger
  546-570 Zinc-finger double domain
  561-582 Zinc finger, C2H2 type
  561-582 C2H2-type zinc finger
  574-599 Zinc-finger double domain
  588-610 Zinc finger, C2H2 type
  588-610 C2H2-type zinc finger
  588-610 C2H2-type zinc finger
  602-626 Zinc-finger double domain
  616-638 Zinc finger, C2H2 type
  616-638 C2H2-type zinc finger
  616-626 C2H2-type zinc finger
  630-659 Zinc-finger double domain
  650-671 Zinc finger, C2H2 type
  650-671 C2H2-type zinc finger
  650-667 C2H2-type zinc finger
  663-688 Zinc-finger double domain
  677-699 Zinc finger, C2H2 type
  677-699 C2H2-type zinc finger
  677-699 C2H2-type zinc finger
Sequence: 
(in bold interface residues)		   1 MLAEPVPDALEQEHPGAVKLEEDEVGEEDPRLAESRPRPEVAHQLFRCFQYQEDMGPRAS   60
  61 LGRLRELCNHWLRPALHTKKQILELLDFSFSAGKNAPADIISEEQNSPSQVPSHSPQTEL  120
 121 PSEEIPALHPLNELPPPQPAPIRPAEPEEWRLAPSSNWPMSPEPQEILQDPRESNPSQGP  180
 181 SWLEENSRDQELAAVLESLTFEDTSEKRAWPANPLGFGSRMPDNEELKVEEPKVTTWPVV  240
 241 IGAESQTEKPEVAGEPLTQTVGQETSSTGWGGTPADGSEVVKAHQLQSHPNLQPHPSSRS  300
 301 FRCLWCGKTFGRSSILKLHMRTHTDERPHACHLCNRRFRQSSHLTKHLLTHSSEPAFRCA  360
 361 ECNQGFQRRSSLMQHLLAHAQGKNLTPNPEGKTKVPEMAAVLCSHCGQTFKRRSSLKRHL  420
 421 RNHAKDKDHLSSEDPGSLSSSQESNPYVCSDCGKAFRQSEQLMIHTRRVHTRERPFSCQV  480
 481 CGRCFTQNSQLISHQQIHTGEKPHACPQCSKRFVRRAGLARHLLTHGSLRPYHCAQCGKS  540
 541 FRQMRDLTRHVRCHTGEKPCRCNECGEGFTQNAHLARHQRIHTGEKPHACDICGHRFRNS  600
 601 SNLARHRRSHTGERPYSCPTCGRSFRRNAHLQRHLITHTGSKQEKEVPQECPECGKSFNR  660
 661 SCNLLRHLLVHTGARPYSCALCGRSFSRNSHLLRHLRTHARE
Interface Residues: 311, 312, 314, 315, 318, 339, 340, 341, 342, 343, 345, 346, 350, 368, 369, 370, 371, 374, 382, 412, 414, 415, 418, 458, 460, 461, 464, 468, 487, 489, 490, 492, 493, 515, 516, 517, 518, 521, 524, 542, 543, 544, 545, 546, 548, 549, 555, 569, 570, 571, 572, 573, 574, 576, 577, 579, 580, 581, 583, 598, 599, 600, 601, 602, 604, 605, 606, 607, 626, 627, 628, 629, 630, 631, 632, 633, 634, 642, 645, 646, 659, 660, 661, 662, 663, 665, 666, 688, 690, 691, 694
3D-footprint Homologues: 3uk3_C, 7w1m_H, 5k5i_A, 6u9q_A, 7y3m_I, 8ssu_A, 8ssq_A, 2gli_A, 5v3j_F, 2lt7_A, 6a57_A, 2kmk_A, 7ysf_A, 5yel_A, 1tf3_A, 1tf6_A, 4x9j_A, 1g2f_F, 5ei9_F, 6e94_A, 1ubd_C, 7n5w_A, 6jnm_A, 5kkq_D, 5yj3_D, 7txc_E, 1llm_D, 6blw_A, 8h9h_G, 2jpa_A, 7y3l_A, 8cuc_F, 5kl3_A, 2wbs_A, 6ml4_A, 4m9v_C, 2drp_D, 1yuj_A, 1f2i_J, 8gn3_A
Binding Motifs: M0398_1.02 aGgrAGTGCaa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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