Transcription Factor
| Accessions: | Carub.0004s2981.1.p (EEADannot 2026-03-04) |
| Names: | SPL1 |
| Organisms: | Capsella rubella |
| Libraries: | EEADannot 2026-03-04 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:C3H(C),C2HC zinc-fingers like factors SBP |
| Length: | 934 |
| Pfam Domains: | 144-221 SBP domain |
| Sequence: (in bold interface residues) | 1 MEARIEGEPQHFYGFRAVDLRSVGKRTVEWDLNDWKWDGDLFVATQLHPGGSETTGRQFF 60 61 PIGNSSNSSSSCSDEAHNSESLVRSTREVEKKRRAVAIEGDTNGGALTLKLGDNGCDLNG 120 121 EREGNSAAKKTKFGGAGAVTNRAVCQVGNCEADLSKVKDYHRRHKVCEMHSKATSAIVGG 180 181 IMQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKTNPEPGANGNPSDDQSSNYLLI 240 241 SLLKILSNMHTTRSDHTGDQDLMSHLLKSLVSHAGEQLGKNLVELLLQGGSQGSLNLGNS 300 301 GLLAIEEAPQEDLKQLSVNVPEVPRQELYANGTATENRSEKQVRMNDFDLNDIYIDSDDT 360 361 DIERSPPPTNPATSSLDYPSWIHQSSPPQTSRNSDSASDQSPSSSGEDAQMRTGRIVFKL 420 421 FGKEPNDFPVVLRGQILDWLSHSPTDMESYIRPGCIVLTIYLRQAETAWEELSDDLGFSL 480 481 RKLLDLSDDPLWTTGWIYVRVQNQLAFVYNGQVVVDTSLPLKSHDHSHIISVKPLAVAAA 540 541 GKAQFTVKGINLRRRGTRLLCAVEGKYLIQESTHDSTTEENDDQNNEIVECVNFSCDLPI 600 601 ISGRGFMEIEDQGLSSSFFPFLVVEDNDVCSEIRILETTLEFTGTDSAKQAMDFIHEIGW 660 661 LLHRSKLGESDPNPDVFPLIRFQWLIEFSMDREWCAVIRKLLNMFFDGAVGDFSSSSNAT 720 721 LSELCLLHRAVRKNSKPLVEMLLRYVPKQQRNSLFRPDAAGPAGLTPLHIAAGKDGSEDV 780 781 LDALTEDPAMVGIEAWKTSRDSTGFTPEDYARLRGHFSYIHLIQRKINKKSTAEDHVVVN 840 841 IPVSFSDREQKEPKSGPVTSALEITQINQLPCKLCDHKLVYGTTRRSVAYRPAMLSMVAI 900 901 AAVCVCVALLFKSCPEVLYVFQPFRWELLDYGTS |
| Interface Residues: | 800, 802, 843, 846, 847 |
| 3D-footprint Homologues: | 6m3d_C |
| Binding Motifs: | EEAD0612 tGTACGGA |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.