Transcription Factor

						

			
Accessions: T007242_1.02 (CISBP 1.02)

			
Names: DDB_G0275333, T007242_1.02;
Organisms: Dictyostelium discoideum
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:ARID/BRIGHT
Length: 478
Pfam Domains:    43-130 ARID/BRIGHT DNA binding domain
  414-466 Sin3 binding region of histone deacetylase complex subunit SAP30
Sequence: 
(in bold interface residues)		   1 MSGINSNVNNNNSSNNNNNNNNNGNQQQNNGNNSPNIQPVDDAEEKRFISNLFYFMTQRG   60
  61 TPIEKIPIFDHKELNLYKLYNCVISRGGLEAVIDNKLWRQITTDLAVDPERTDAGFRLRI  120
 121 HYLKYLYPYERKHYLKIEDDEQFDYEAFEKHLSKSPADKKTSISRKKKQQLQNHYNHPSN  180
 181 QIPQNHHQSLHQHIPHSQTPHLNNNHHHHNNHLQQQQQQQQQQQQQQQQQQQQQQQYHIL  240
 241 QQQQQQQQNINSNNISSGKTTPSPTSSPGGLISSPSSSPHNRQSQILPQSSNFNSINNNN  300
 301 NNNNNSFNSNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNINNNSNSNSNNNNNNNIT  360
 361 NNLVSANSSIPSPSNVLNIGNNFDSFSNDSILSLYSPSNFSTPQNSPAVNLKLLEIKSLK  420
 421 KYNAYHRLKVSHSPSRTELVSAVIHHFSHQNIDEDTIITSFLKRVKSESSRIRQLEKV
Interface Residues: 99, 112, 113, 116, 117
3D-footprint Homologues: 2oeh_A, 1kqq_A
Binding Motifs: M0101_1.02 wwtttrATwr
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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