Transcription Factor
Accessions: | 5zdz_N (3D-footprint 20231221), 5ze2_N (3D-footprint 20231221) |
Names: | High mobility group protein 1, High mobility group protein B1, HMG-1, HMGB1 A-B box, HMGB1_MOUSE |
Organisms: | Mus musculus |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Length: | 117 |
Pfam Domains: | 2-62 Domain of unknown function (DUF1898) 3-63 HMG (high mobility group) box 63-117 HMG (high mobility group) box 63-116 Domain of unknown function (DUF1898) |
Sequence: (in bold interface residues) | 1 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAKEKGKFEDMAKADKARYER 60 61 EMKRPPSAFFLFCSEYRPKIKGEIGDVAKKLGEMWNNTDDKQPYEKKAAKLKEKYEK |
Interface Residues: | 4, 6, 7, 10, 28, 32, 64, 67, 69, 70, 73, 77, 84, 85, 88 |
3D-footprint Homologues: | 1j5n_A, 1ckt_A, 4y60_C, 3f27_D, 6jrp_D, 1o4x_B, 3u2b_C, 7m5w_A, 1qrv_A, 4s2q_D, 2gzk_A, 1hry_A |
Binding Motifs: | 5zdz_CN CTnnCTnnnnACTTnnnnnnnnnnnnnGT 5ze2_N CTnnnnnnnnacTT |
Binding Sites: | 5zdz_G 5zdz_M 5ze2_G 5ze2_M |
Publications: | Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed] |
Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.