Transcription Factor
| Accessions: | 5zdz_N (3D-footprint 20231221), 5ze2_N (3D-footprint 20231221) |
| Names: | High mobility group protein 1, High mobility group protein B1, HMG-1, HMGB1 A-B box, HMGB1_MOUSE |
| Organisms: | Mus musculus |
| Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
| Length: | 117 |
| Pfam Domains: | 2-62 Domain of unknown function (DUF1898) 3-63 HMG (high mobility group) box 63-117 HMG (high mobility group) box 63-116 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 GKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKAKEKGKFEDMAKADKARYER 60 61 EMKRPPSAFFLFCSEYRPKIKGEIGDVAKKLGEMWNNTDDKQPYEKKAAKLKEKYEK |
| Interface Residues: | 4, 6, 7, 10, 28, 32, 64, 67, 69, 70, 73, 77, 84, 85, 88 |
| 3D-footprint Homologues: | 1j5n_A, 1ckt_A, 7m5w_A, 1qrv_A, 4s2q_D, 2gzk_A, 4y60_C, 3f27_D, 6jrp_D, 1o4x_B, 3u2b_C, 1hry_A |
| Binding Motifs: | 5zdz_CN CTnnCTnnnnACTTnnnnnnnnnnnnnGT 5ze2_N CTnnnnnnnnacTT |
| Binding Sites: | 5zdz_G 5zdz_M 5ze2_G 5ze2_M |
| Publications: | Kim MS, Chuenchor W, Chen X, Cui Y, Zhang X, Zhou ZH, Gellert M, Yang W. Cracking the DNA Code for V(D)J Recombination. Mol Cell 70:358-370 (2018). [Pubmed] |
| Related annotations: | PaperBLAST |
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