Transcription Factor

Accessions: AtMYB43 (AthaMYB 1.0)
Names: AtMYB43, Myb domain protein 43, MYB transcription factor, Putative transcription factor, Putative uncharacterized protein At5g16600
Organisms: Arabidopsis thaliana
Libraries: AthaMYB 1.0 1
1 Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Uniprot: Q9SPG7
Length: 328
Pfam Domains: 14-61 Myb-like DNA-binding domain
17-77 Myb-like DNA-binding domain
71-111 Myb-like DNA-binding domain
73-118 Myb-like DNA-binding domain
Sequence:
(in bold interface residues)
1 MGRQPCCDKVGLKKGPWTIEEDKKLINFILTNGHCCWRALPKLSGLLRCGKSCRLRWINY 60
61 LRPDLKRGLLSEYEEQKVINLHAQLGNRWSKIASHLPGRTDNEIKNHWNTHIKKKLRKMG 120
121 IDPLTHKPLSEQEASQQAQGRKKSLVPHDDKNPKQDQQTKDEQEQHQLEQALEKNNTSVS 180
181 GDGFCIDEVPLLNPHEILIDISSSHHHHSNDDNVNINTSKFTSPSSSSSSTSSCISSVVP 240
241 GDEFSKFFDEMEILDLKWLSSDDSLGDDISKDGKFNNSTVDTMNLWDINDLSSLDMFMNE 300
301 HDDGFIGNGNGCSRMVLDQDSWTFDLL*
Interface Residues: 14, 49, 50, 51, 52, 54, 55, 58, 59, 60, 101, 102, 105, 106, 109, 110, 111
3D-footprint Homologues: 3osg_A, 2kdz_A, 7xur_A, 6kks_A, 3zqc_A, 1mse_C, 5eyb_B, 7c4r_A
Binding Motifs: AtMYB43_I awmAGTTr
AtMYB43_II rbTrGTTr
Binding Sites: AAAAGTTA
ACAAGTTA
AGGTTA
AGTAGTTA
AGTGGTTA
ATTAGTTG
GCTTGTTG
GTCAGTTA
GTTAGTTG
TACTGTTG
TAGTTA
Publications: Kelemen Z., Sebastian A., Xu W., Grain D., Salsac F., Avon A., Berger N., Tran J., Dubrecq B., Lurin C., Lepiniec L., Contreras-Moreira B., Dubos C. Analysis of the DNA-Binding Activities of the Arabidopsis R2R3-MYB Transcription Factor Family by One-Hybrid Experiments in Yeast. PLoS One 10, e0141044 (2015). [Pubmed]
Related annotations: PaperBLAST

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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.