Transcription Factor
| Accessions: | T099773_1.02 (CISBP 1.02) |
| Names: | LOC_Os09g35910, T099773_1.02; |
| Organisms: | Oryza sativa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 249 |
| Pfam Domains: | 31-83 Homeobox domain 85-128 Homeobox associated leucine zipper |
| Sequence: (in bold interface residues) | 1 MDGEEDSEWMMMDVGGKGGKGGGGGGAADRKKRFSEEQIKSLESMFATQTKLEPRQKLQL 60 61 ARELGLQPRQVAIWFQNKRARWKSKQLEREYSALRDDYDALLCSYESLKKEKLALIKQLE 120 121 KLAEMLQEPRGKYGDNAGDDARSGGVAGMKKEEFVGAGGAATLYSSAEGGGTTTTTTAKL 180 181 MPHFGSDDVDAGLFLRPSSQHHPPPPHAGAGFTSSEPAADHQSFNFHSSWPSSTEQTCSS 240 241 TPWWEFESE |
| Interface Residues: | 29, 30, 31, 32, 33, 69, 70, 72, 73, 76, 77, 79, 80, 81, 84 |
| 3D-footprint Homologues: | 2lkx_A, 1mnm_C, 8ejp_B, 3d1n_M, 1puf_A, 1ig7_A, 8pmf_A, 1b72_A, 1jgg_B, 5jlw_D, 9b8u_A, 4cyc_A, 1nk2_P, 1fjl_B, 8osb_E, 5zjt_E, 2r5y_A, 5hod_A, 1puf_B, 2ld5_A, 1k61_B, 1le8_B, 3rkq_B, 7psx_B, 8ik5_C, 7q3o_C, 1le8_A, 1au7_A, 6ryd_F, 7xrc_C, 6a8r_A, 4xrm_B, 3a01_E, 8g87_X, 6wig_A, 8bx1_A, 6es3_K, 1du0_A, 4xrs_G, 3cmy_A, 1zq3_P, 5zfz_A, 5flv_I, 2hdd_A, 4qtr_D, 8eml_B, 3lnq_A, 2hos_A, 6m3d_C |
| Binding Motifs: | M1108_1.02 rwyyAATCAw |
| Related annotations: | PaperBLAST |
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