Transcription Factor
| Accessions: | T02716 (AthalianaCistrome v4_May2016), Q94FU0 (JASPAR 2024) |
| Names: | AT1G25340, MYB116, T02716;, Myb domain protein 116, Myb family transcription factor, MYB transcription factor, Putative transcription factor MYB116, Q94FU0_ARATH |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:MYB |
| Length: | 283 |
| Pfam Domains: | 20-67 Myb-like DNA-binding domain 23-80 Myb-like DNA-binding domain 73-116 Myb-like DNA-binding domain 77-121 Myb-like DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MSNITKKKCNGNEEGAEQRKGPWTLEEDTLLTNYISHNGEGRWNLLAKSSGLKRAGKSCR 60 61 LRWLNYLKPDIKRGNLTPQEQLLILELHSKWGNRWSKISKYLPGRTDNDIKNYWRTRVQK 120 121 QARQLNIDSNSHKFIEVVRSFWFPRLINEIKDNSYTNNIKANAPDLLGPILRDSKDLGFN 180 181 NMDCSTSMSEDLKKTSQFMDFSDLETTMSLEGSRGGSSQCVSEVYSSFPCLEEEYMVAVM 240 241 GSSDISALHDCHVADSKYEDDVTQDLMWNMDDIWQFNEYAHFN |
| Interface Residues: | 20, 55, 56, 57, 58, 60, 61, 64, 65, 66, 107, 108, 111, 112, 115, 116, 117 |
| 3D-footprint Homologues: | 3osg_A, 1vfc_A, 2kdz_A, 2qhb_A, 3zqc_A, 6kks_A, 1mse_C, 7xur_A |
| Binding Motifs: | M0511 aaAGTTAGGYArr M0568 aamaawAgTTAGGyw MA1764.1 yyTRCCTAACTtt MA1764.2 TRCCTAACTt |
| Publications: | Zhong R, Ye ZH. MYB46 and MYB83 bind to the SMRE sites and directly activate a suite of transcription factors and secondary wall biosynthetic genes. Plant Cell Physiol 53:368-80 (2012). [Pubmed] |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.