Transcription Factor

						

			
Accessions: T008738_1.02 (CISBP 1.02)

			
Names: LOC_Os02g57820, T008738_1.02;
Organisms: Oryza sativa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:AT hook
Length: 394
Pfam Domains:   119-131 AT hook motif
  180-191 AT hook motif
  210-326 Domain of unknown function (DUF296)
Sequence: 
(in bold interface residues)		   1 MDGRESTVASGSNFSSFYVQHRGIGVPGGSGHPAGLHGPPPGGYRQHLDAVSAGYPFQPP   60
  61 HIGGSHIGQGYHHVDASAPVAQHGSGGGGGGMDIGMGVEMSADAKGDQGSGAGQDEPVKK  120
 121 KRGRPRKYKPDGAVTLGLSPSSSTPHSSTSAMGTMVTTPGSGFGSGAGSGGSGSGALTEK  180
 181 RGRGRPPGSGKMQQLASLGKWFLGSVGTGFTPHVIIISPGEDVAARIMSFSQQGPRAVCI  240
 241 ISATGAVSTATLHQDSNSGGVVTYEGRFEILCLSGSYLVIEEGGSRTRSGGLCIALCGPD  300
 301 HRVIGGSVGGVLTAAGTVQVIVGSFMYGGTKKNKAKAEQETENNEEPIGGEEETPTMALP  360
 361 DHNMPHHTMGGWSAGLMRQMDSRTPNIDINSIRE
Interface Residues: 92, 94
3D-footprint Homologues: 4gnx_Z
Binding Motifs: M0137_1.02 awwwAwww
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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