Transcription Factor
| Accessions: | T012394_1.02 (CISBP 1.02), Q8GZM7 (JASPAR 2024) |
| Names: | PIL5, T012394_1.02;, AtbHLH15, Basic helix-loop-helix protein 15, bHLH 15, bHLH transcription factor bHLH015, PIF1_ARATH, Protein PHY-INTERACTING FACTOR 1, Protein PHYTOCHROME INTERACTING FACTOR 3-LIKE 5, Transcription factor EN 101, Transcription factor PIF1 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | experiment type:PBM, family:bHLH |
| Length: | 478 |
| Pfam Domains: | 288-334 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MHHFVPDFDTDDDYVNNHNSSLNHLPRKSITTMGEDDDLMELLWQNGQVVVQNQRLHTKK 60 61 PSSSPPKLLPSMDPQQQPSSDQNLFIQEDEMTSWLHYPLRDDDFCSDLLFSAAPTATATA 120 121 TVSQVTAARPPVSSTNESRPPVRNFMNFSRLRGDFNNGRGGESGPLLSKAVVRESTQVSP 180 181 SATPSAAASESGLTRRTDGTDSSAVAGGGAYNRKGKAVAMTAPAIEITGTSSSVVSKSEI 240 241 EPEKTNVDDRKRKEREATTTDETESRSEETKQARVSTTSTKRSRAAEVHNLSERKRRDRI 300 301 NERMKALQELIPRCNKSDKASMLDEAIEYMKSLQLQIQMMSMGCGMMPMMYPGMQQYMPH 360 361 MAMGMGMNQPIPPPSFMPFPNMLAAQRPLPTQTHMAGSGPQYPVHASDPSRVFVPNQQYD 420 421 PTSGQPQYPAGYTDPYQQFRGLHPTQPPQFQNQATSYPSSSRVSSSKESEDHGNHTTG |
| Interface Residues: | 289, 290, 292, 293, 294, 296, 297, 319 |
| 3D-footprint Homologues: | 7rcu_E, 5nj8_D, 4h10_A, 8hov_A, 6od3_F, 5gnj_I, 1a0a_B, 7ssa_L, 5v0l_A, 8ia3_B, 7d8t_A, 5i50_B, 1am9_A, 4zpk_A, 7f2f_B, 7xi3_A, 6g1l_A, 5eyo_A, 8osl_P, 4h10_B, 8osb_B, 1an4_A, 8osl_O, 7xhv_B, 5nj8_C, 5v0l_B |
| Binding Motifs: | MA0552.1 rkrrggwCACGTGg M0156_1.02 rbCACGTGvy MA0552.2 CACGTG |
| Binding Sites: | MA0552.2.1 MA0552.1.1 MA0552.1.10 MA0552.1.11 MA0552.1.12 MA0552.1.13 MA0552.1.14 MA0552.1.15 MA0552.1.16 MA0552.1.17 MA0552.1.18 MA0552.1.19 MA0552.1.2 MA0552.1.20 MA0552.1.3 MA0552.1.4 MA0552.1.5 MA0552.1.6 MA0552.1.7 MA0552.1.8 MA0552.1.9 MA0552.2.10 MA0552.2.11 MA0552.2.12 MA0552.2.13 MA0552.2.14 MA0552.2.15 MA0552.2.16 MA0552.2.17 MA0552.2.18 MA0552.2.19 MA0552.2.2 MA0552.2.20 MA0552.2.3 MA0552.2.4 MA0552.2.5 MA0552.2.6 MA0552.2.7 MA0552.2.8 MA0552.2.9 |
| Publications: | Huq E., Al-Sady B., Hudson M., Kim C., Apel K., Quail P. H. Phytochrome-interacting factor 1 is a critical bHLH regulator of chlorophyll biosynthesis.. Science 305:1937-1941 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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