Transcription Factor

						

			
Accessions: Q4H2V9 (JASPAR 2024)

			
Names: Q4H2V9_CIOIN, Rel1 protein, RelA
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H2V9
Length: 706
Pfam Domains:     7-177 Rel homology domain (RHD)
Sequence: 
(in bold interface residues)		   1 MDRIPVLEIVEQPKQRGMRFRYECEGRSAGSIPGKNTNGDRKTWPSCQVLNYSGVAIMRV   60
  61 SLVSKDDPPRPHPHSLVGRDCNNGVCQINVDPGNQMLGVFPNLGIQCVRRREVSQAIQDR  120
 121 LNHGVNPFGTMLDGDERSAVDVDLNIVRLCFEAFIPDARGKYTQKLEPVVSDPIYDKKAT  180
 181 CSSVLKICRVDKTHGSCMGNEEVFLLCDKVQKEDIQVVFYRDNWEALGDFSSVDVHRQVA  240
 241 IVFRTPPFCNENIQEKVDVQFKLRRPSDMETSKPLVFTYLPVYHEMPQKHKFPTQLLSHP  300
 301 IRSNNNKNGEIRKFISDRIRKSKEPAQRQMYSPNPNIAAASLNHHGMIRNPSNPTICPTA  360
 361 QPSTEQFTSTMNPSYQYVKREDHSSTAIFPGDPQWPDSSHSQPPFPSASSLFNDSMVQPG  420
 421 FGPIQNTTATPFFDANSGKFISEKSTISEVQKSELAMPTALPPADDGQTQRSYFWSDLLK  480
 481 QEDSIPRLDAEQTRQLLQDNVSMPDTALENISMDSMLEQWMSKKCSIEGPMSINLTDILA  540
 541 SENLPSTNNGPTQPIENEYQQMSPYPAFSTSNTAPTTSNLLTQSMTFSQTTMPLDATSTG  600
 601 ILSPNHTPQLFNHQQHPVMSPIHPSSHQPQQNAVNMQRMDMNLPGQQQRFHPQFSEPTPF  660
 661 GTNSNNNHCIEQTNPGTFALSPTQNDHNVESTIISTFLQNLETVQR
Interface Residues: 19, 21, 22, 24, 25, 27, 28, 29, 177, 178, 180, 209, 237
3D-footprint Homologues: 1imh_C, 9bdw_A, 1nfk_A, 1a3q_A, 2o61_A, 1gji_A, 7cli_B
Binding Motifs: MA1911.1 kkkkkkgGGAATTyccsydk
MA1911.2 gGGAATTycc
			
Publications: Arizza V, Bonura A, La Paglia L, Urso A, Pinsino A, Vizzini A. Transcriptional and in silico analyses of MIF cytokine and TLR signalling interplay in the LPS inflammatory response of Ciona robusta. Sci Rep 10:11339 (2020). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.