Transcription Factor
| Accessions: | T037195_1.02 (CISBP 1.02) |
| Names: | che-1, T037195_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 273 |
| Pfam Domains: | 166-186 C2H2-type zinc finger 166-188 C2H2-type zinc finger 166-188 Zinc finger, C2H2 type 180-204 Zinc-finger double domain 194-216 Zinc finger, C2H2 type 195-216 C2H2-type zinc finger 196-216 C2H2-type zinc finger 208-232 Zinc-finger double domain 222-244 C2H2-type zinc finger 222-244 Zinc finger, C2H2 type 222-244 C2H2-type zinc finger 237-260 Zinc-finger double domain 250-272 C2H2-type zinc finger 250-272 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MSYHYQMNNNNTDFFDSANYIPQMQMHHGYQDFYASDSTSSMPSSGTTQQALQQTENGII 60 61 QGQNGSDHGAYGGWRQHDWNSTSSWSIGNQLEMENGTLTMSHGATNDGNIRNNQQMMTSN 120 121 HITTDSFRQIPPSGLCYMDPTPSLRLPKKEPLPVQRPMARSTPKPFRCQTCGKAFSQAAN 180 181 LTAHKRIHTGEKPFMCPVCNRPFSQSSSLVTHRRTHTGERPYPCAQCEKAFTDSSTLTKH 240 241 LRTHTGHKPYVCSICMMKFTQSGNLHRHMKTHK |
| Interface Residues: | 48, 49, 50, 51, 53, 54, 166, 176, 177, 178, 179, 180, 182, 183, 185, 186, 187, 189, 204, 205, 206, 207, 208, 210, 211, 212, 232, 233, 234, 235, 236, 237, 238, 239, 240, 260, 261, 262, 263, 264, 266, 267, 271 |
| 3D-footprint Homologues: | 1per_L, 2kmk_A, 8cuc_F, 7y3l_A, 7n5w_A, 6jnm_A, 2gli_A, 8ssu_A, 1g2f_F, 5kkq_D, 5ei9_F, 1llm_D, 5kl3_A, 1ubd_C, 6ml4_A, 5v3j_F, 8ssq_A, 1f2i_J, 7w1m_H, 6e94_A, 7ysf_A, 2jpa_A, 1tf3_A, 3uk3_C, 6u9q_A, 5yel_A, 4x9j_A, 2wbs_A, 1tf6_A, 6blw_A, 5k5l_F, 8h9h_G, 4m9v_C, 2lt7_A, 6a57_A, 8gn3_A, 7txc_E, 5k5i_A, 2drp_D, 7y3m_I, 5yj3_D |
| Binding Motifs: | M0388_1.02 wagGGcTTCm |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.