Transcription Factor

						

			
Accessions: T141098_1.02 (CISBP 1.02)

			
Names: fgenesh1_pg.scaffold_194000034, T141098_1.02;
Organisms: Physcomitrella patens
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:SBP
Length: 726
Pfam Domains:   238-315 SBP domain
Sequence: 
(in bold interface residues)		   1 MNPSANTNEQQGGHSWSTENWDNPGAVVTLDQATSQYSSANRLEWEWDPMILAQHPGNDI   60
  61 TSTDGGDGDRMKNQISTDVAEVAELDTLFKRFTGTMSSLRASYNINMLPAGLPSNFTQNH  120
 121 MGIYSSAGIRSFGSLDGSAQLPATSNLHNVLGPSGIPGLAATSGAGLDNDIRSYDQRRRE  180
 181 FFAVGMHDHHVKREEVNDGHARIGLNLGVRTYFSTEETATNRLGKRHRAGSPGSIAPMCQ  240
 241 AEGCKFDLSLAKPYHRRHKVCELHSKAPNVIAGGQTQRFCQQCSRFHSLGEFDDGKRSCR  300
 301 KRLADHNRRRRKPQSNTATPGGTTAESTGLKGGENDIPGCNRNNASKSMIMSQKSKSSPS  360
 361 SVSLDDSDDQKPGSVGNNLQLRSSGQGYGRRLGDDLHQSHSGMQMSSQSLAGSESQALLS  420
 421 AMSPVPLMLQNAKRQMSMMSGANNHGQDHSLYQHLQGVSAGQTGPKLSLSFLGGQMGRSQ  480
 481 TMSSQTYNGMEPPLSWLRPLNPRSELTQVVGRQGTINHQHLMSTDSKSGITSASANSSNS  540
 541 QEHDAQVFSPSSQNLIPRDIASPEWMLGSMAGQTPRTESNHFGNSSLNNLTGNGQLESGH  600
 601 PVMSLIDSPKEGDGGSNQAGQRGHTPVEFMQQHNTGADSGGDNNSRGGGSTVDSPDMKYP  660
 661 ELQALRPYGGGPPSIYESHNNLMLLILHLTKMKWVVLLKFNSDVGALSSNNLLSVLILYN  720
 721 RCPDFC
Interface Residues: 33, 34, 54, 214, 218, 221, 235
3D-footprint Homologues: 6ppr_A, 2pfj_A
Binding Motifs: M1570_1.02 dyyGTACrrh
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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