Transcription Factor

						

			
Accessions: T134716_1.02 (CISBP 1.02)

			
Names: CBG20542, T134716_1.02;
Organisms: Caenorhabditis briggsae
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Nuclear receptor
Length: 474
Pfam Domains:      5-75 Zinc finger, C4 type (two domains)
  250-437 Ligand-binding domain of nuclear hormone receptor
Sequence: 
(in bold interface residues)		   1 MVRGKCTVCDSPNATNYHFGAQSCKACAAFFRRSIAMGQSYDCLGDGVKPCKIDHTLRIN   60
  61 CRHCRLKKCLRAGMVRDLVQAKREVKTDQKNSRNSRNSSQSEENFDQYPSTSQKPSTDVI  120
 121 FYSENEWDYCQPSPKSRKMTESEENLMGMEELQQFIQVPDDFPILEDSRSRMTSFSESSA  180
 181 YLSGIEEEERLFALAALYTDQVINLNMRRRITYTDHLLGSVFDGPCVCPYEKSDLKLFDH  240
 241 RTYRQKNRSDYTMILDYINRFPDFLNLSKLSQIVLFRTAAAVDVLLDQAYYSQVLFPNDA  300
 301 VLVTANGEYLAMEPIPKIENQRDSGNFESDEDFDKFSKPFFMIFKPILIYSFRTLTSMKI  360
 361 RQWQHVCEPLKNLKMSLTEFSLFKALTIWHHNYYKLQTTGRQICSRQRDDIFRTLLLICD  420
 421 EEGHSDALLRASDILLAVGIVMAEVHEMVTSYIEITVYDVLDDPILKDMLRFQY
Interface Residues: 15, 16, 18, 19, 25, 26, 28, 29, 32, 33, 59, 81, 83, 85, 88, 94, 96
3D-footprint Homologues: 6fbq_A, 6l6q_B, 7wnh_D, 1lo1_A, 3g9m_B, 1a6y_A, 4oln_B, 2nll_B, 1lat_A, 7xv6_B, 2ff0_A, 1dsz_A, 4umm_E, 3cbb_A, 7xvn_C, 4iqr_B, 2han_A, 1hcq_E, 8cef_H, 5krb_G, 2han_B, 1kb2_B, 2a66_A, 8hbm_B, 5e69_A, 4hn5_B, 8rm6_A, 5emc_A, 7prw_B, 5cbx_B, 3g6t_A, 1r4i_A, 5cbz_E, 4tnt_B
Binding Motifs: M1482_1.02 kTGTAGyc
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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