Transcription Factor
| Accessions: | T060939_1.02 (CISBP 1.02) |
| Names: | NCU00694, T060939_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 708 |
| Pfam Domains: | 627-652 C2H2-type zinc finger 658-689 C2H2-type zinc finger |
| Sequence: (in bold interface residues) | 1 MAASLSARAVLTPRGSSLSGGAIAGAVVGSCIGFFLILLCLFPFVVRAWRRRAEKHGDIG 60 61 HAEKGQAPGGPIFHNSPGSTPKRLSGEGEGYAPDTPPPGLASPAPFIPGDGHHPDQRAAS 120 121 HHQSQHTPALPRGVGIQQGLPSSISPPFQPPSPTTSATASFQRDQPGPDSTRTRVASIAT 180 181 TEAESNRDLSLDDSHGLSPPTHQVPPAVSPGGITEEPETFERPTQRHSFPHLPESIRNFI 240 241 YRRQSGNSRRDSKRSTLGGTAGTRSPSLLTTTDYPVPTHQPEPVPPVFEVDTEAPGAAYE 300 301 YYHGHPYLNSTSQPYPDDSSAPPPPQPTTLPTTLLRQDTLLASWEIQQGINRTDSLPPTT 360 361 IVSDLPSPCVDLTVGPTASPMEMMRPTNQAESAWAVNQEIIKLENTPPAPAVSAFSPQTI 420 421 PAEFAYSQQMQSPQEQYGPEPQYSEYTHVPEIQQNGQDFDLDSAALYPNDGFGLHDMSDI 480 481 STPPPLSESSRQNTPSTRLTYSPSPRPDFDQNTNFAPLMVPNSPANFSSSTGGFSSNQGM 540 541 SPGALSVNDYSSSQGMSPGGLLVNDYGAQVMYPQGLSLSSIPQSGMSPTTPSSSGASPRV 600 601 FACDQCHREFDQIHKLNHHKRYHERPHECTHPGCTMRFGTKTHLDRHINDKHKKTRQFHC 660 661 TVPECPWSRQGGRSFPRKDNWRRHMINKHQITPLQEPIEYNDVAMGDA |
| Interface Residues: | 574, 578, 582, 583, 584, 585, 587, 588, 590, 591, 592, 593, 596, 610, 611, 612, 613, 614, 615, 618, 619, 622, 638, 639, 640, 641, 642, 643, 644, 645, 646, 647, 649, 650, 653, 676, 677, 678, 679, 680, 682, 683, 685 |
| 3D-footprint Homologues: | 7ysf_A, 5kkq_D, 8ssu_A, 5und_A, 7txc_E, 1g2f_F, 2i13_A, 7w1m_H, 6jnm_A, 5ei9_F, 1ubd_C, 8h9h_G, 6u9q_A, 5yel_A, 1mey_C, 2gli_A, 8ssq_A, 5kl3_A, 4x9j_A, 7n5w_A, 4m9v_C, 6e94_A, 6wmi_A, 1tf3_A, 7eyi_G, 1tf6_A, 6a57_A, 6blw_A, 2wbs_A, 5yj3_D, 6ml4_A, 1llm_D, 2jpa_A |
| Binding Motifs: | M0465_1.02 GGAGGCCk |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.