Transcription Factor

						

			
Accessions: Q4H3J2 (JASPAR 2024)

			
Names: Q4H3J2_CIOIN
Organisms: Ciona intestinalis
Libraries: JASPAR 2024 1
1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed]
Uniprot: Q4H3J2
Length: 611
Pfam Domains:   208-303 Fork head domain
Sequence: 
(in bold interface residues)		   1 MMTVQCCVQYNTSEDKSDHKRFMMNRIESHGASRDNVIGSAYPQQQADAILQNWKSSAAG   60
  61 PTRNKHRDGESRSPVQGKPYQRPDVTKSSPNEMSAIECMRNAVQQMQEKVQASAAKTTQH  120
 121 SALNDTYVDVTSLSSPATLVRESFRQNWLPKSPMVDERSSSPVSSEGNPPARCASSSGED  180
 181 ETREKDEELRKIGEEMEEYSNESKKNVKPPYSYIALITMSILQSPDKKLTLSGICDFIMN  240
 241 RFPYYKEKFPAWQNSIRHNLSLNDCFVKIPREPGNPGKGNYWTMDPEAEDMFDNGSFLRR  300
 301 RKRFKRQQRDPFRDNVLAASMNAASPYGRPYGLAATQQAAIMAASMNPYAYMNPLPAHIP  360
 361 LLPPHEINNRQAALMAFGSSRLPQMTTNHLFPSSPPFPCNPTLSTDARIQAANFANAVAL  420
 421 HSARESVRGQQQAKKLPRNSPFSIESLIGKSSDSAPTTSEHHGSGCSSPSSQTSGRENPV  480
 481 SPVSKLNPGFGPCITSTPKYSGSDREHFFQETGRRESEVRESAAAASRRSSVSPSDSLSP  540
 541 PLPASQPSFPALGSQFNPMFPYNMALNSRMFQQNQSYPPNPSIAQSAQQLNALSAAGFLP  600
 601 SLNGWPCFGRT
Interface Residues: 231, 250, 251, 253, 254, 255, 257, 258, 259, 261, 262, 271, 278, 299, 303
3D-footprint Homologues: 8vfz_O, 8bzm_E, 7vox_H, 2hdc_A, 2uzk_A, 7vou_C, 2a07_J, 7yze_A, 7cby_C, 3co6_C, 6ako_C, 2c6y_A, 7yzg_A, 7tdw_A, 3g73_A, 7yz7_A, 6el8_A, 7tdx_A, 3l2c_A, 7yzb_A, 6nce_A, 8sro_B, 3qrf_G
Binding Motifs: MA1862.1 wwdtkwwTGTTTatwtwdkt
MA1862.2 TGTTTa
			
Publications: José-Edwards DS, Oda-Ishii I, Kugler JE, Passamaneck YJ, Katikala L, Nibu Y, Di Gregorio A. Brachyury, Foxa2 and the cis-Regulatory Origins of the Notochord. PLoS Genet : (2015). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.