Transcription Factor

						

			
Accessions: T146185_1.02 (CISBP 1.02)

			
Names: gei-3, T146185_1.02;
Organisms: Caenorhabditis elegans
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Sox
Length: 640
Pfam Domains:    79-146 HMG (high mobility group) box
   79-137 Domain of unknown function (DUF1898)
Sequence: 
(in bold interface residues)		   1 MSQELSVETSDAGPPTLPSQPSSIGSSVNSAFRSPVKIEPNDDYEQSSVKDVMDVKPEVF   60
  61 QSAKERRRSKVSANEPHVRRPMNAFMIFSKRHRPLVHQQYPNKDNRTVSKILGEWWYSLA  120
 121 ADQKAEYHKLATQVKEAHFKAHPDWKWSTKEKKIKSESLNTTPVALTPLKNKVFDFDIRT  180
 181 SDDLAKSFVDGTALLSPMTPMTPGASAFRHLSSRDSTQSSTSSFDFPGLPLMSPSLSAIS  240
 241 MNTASITSSPALSSATPSFQFDFESLKQGTAGVYPTFNPAMISTLVNSSTPCRQILPMYN  300
 301 TDISSFFLPTASAFRVLNPTISSIIGGFSSADTVTTPLGAPATTMAAMKMSFPETASMLP  360
 361 QLQEKLESVSFLDQIKIEPGETPLPSPNVVRPTIIPTAQFLAPTQQFVLQPTPAQLGIRR  420
 421 NKRPLREIDTDVTVSAKLFKRNDEQMDKLLARVGFTEKFAQLPEFTPKIYNEIPASPNLP  480
 481 TPFKTPGQDQSIFFGANFNPDQQFLSRDNVTPQSACTPMTPMMSGQTTPMFGERSSIKKL  540
 541 LEERRRLVATFLDDQGLFPNNHTINEFQELHKEVFPTRNALILKIREVRQRRMSTGSEAE  600
 601 PSYKPTIENIISALYDKYPHENKLPTSSFSSSTELIDIIV
Interface Residues: 80, 83, 85, 86, 89, 93, 104, 105, 106, 109, 147, 149, 151, 154
3D-footprint Homologues: 4s2q_D, 1j5n_A, 2lef_A, 4y60_C, 1o4x_B, 3f27_D, 7m5w_A, 1qrv_A, 3u2b_C, 2gzk_A, 1hry_A
Binding Motifs: M1610_1.02 ycattsat
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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