Transcription Factor
| Accessions: | T09351 (AthalianaCistrome v4_May2016), Q84TK1 (JASPAR 2024) |
| Names: | AT2G31220, bHLH10, T09351;, AtbHLH10, Basic helix-loop-helix protein 10, BH010_ARATH, bHLH 10, bHLH transcription factor bHLH010, Transcription factor bHLH10, Transcription factor EN 23 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | AthalianaCistrome v4_May2016 1, JASPAR 2024 2 1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:bHLH |
| Length: | 458 |
| Pfam Domains: | 251-292 Helix-loop-helix DNA-binding domain |
| Sequence: (in bold interface residues) | 1 MEEERESLYEEMGCFDPNTPAEVTVESSFSQAEPPPPPPQVLVAGSTSNSNCSVEVEELS 60 61 EFHLSPQDCPQASSTPLQFHINPPPPPPPPCDQLHNNLIHQMASHQQQHSNWDNGYQDFV 120 121 NLGPNSATTPDLLSLLHLPRCSLPPNHHPSSMLPTSFSDIMSSSSAAAVMYDPLFHLNFP 180 181 MQPRDQNQLRNGSCLLGVEDQIQMDANGGMNVLYFEGANNNNGGFENEILEFNNGVTRKG 240 241 RGSRKSRTSPTERERRVHFNDRFFDLKNLIPNPTKIDRASIVGEAIDYIKELLRTIEEFK 300 301 MLVEKKRCGRFRSKKRARVGEGGGGEDQEEEEDTVNYKPQSEVDQSCFNKNNNNSLRCSW 360 361 LKRKSKVTEVDVRIIDDEVTIKLVQKKKINCLLFTTKVLDQLQLDLHHVAGGQIGEHYSF 420 421 LFNTKICEGSCVYASGIADTLMEVVEKQYMEAVPSNGY |
| Interface Residues: | 247, 248, 249, 251, 252, 255, 256 |
| 3D-footprint Homologues: | 8osl_O, 8ia3_B, 7f2f_B, 8osb_B, 7d8t_A |
| Binding Motifs: | M0160 wkTGTCGGTGrhr M0164 rrwwkTGTCGGTGr UN0688.1 dyctcCrCCGACAcydy UN0688.2 cCrCCGACAc |
| Binding Sites: | UN0688.1.1 UN0688.1.10 UN0688.1.11 UN0688.1.12 UN0688.1.13 UN0688.1.14 UN0688.1.15 UN0688.1.16 UN0688.1.17 UN0688.1.18 UN0688.1.19 UN0688.1.2 UN0688.1.20 UN0688.1.3 UN0688.1.4 UN0688.1.5 UN0688.1.6 UN0688.1.7 UN0688.1.8 UN0688.1.9 UN0688.2.1 UN0688.2.10 / UN0688.2.14 / UN0688.2.3 / UN0688.2.4 UN0688.2.11 UN0688.2.12 / UN0688.2.13 UN0688.2.15 UN0688.2.16 UN0688.2.17 UN0688.2.18 / UN0688.2.7 UN0688.2.19 UN0688.2.2 UN0688.2.20 UN0688.2.5 UN0688.2.6 UN0688.2.8 UN0688.2.9 |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.