Transcription Factor
| Accessions: | T095968_1.02 (CISBP 1.02) |
| Names: | six3, T095968_1.02; |
| Organisms: | Oryzias latipes |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 280 |
| Pfam Domains: | 183-233 Homeobox domain 197-231 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 ACLPTRAQMVFRAPLDFISASRLLLPHFADAPPVLSRSRSPEHPPAGFLSFALPGLCFSA 60 61 TQIASVCETLEETGDIERLARFLWSLPVNTDGRDSISEHESVQRARAVVAFHTGCYRELY 120 121 RILETHRFTRASHSKLQAMWLEAHYREAEKLRGRPLGPVDKYRVRKKFPLPRTIWDGEQK 180 181 THCFKERTRGLLREWYLQDPYPNPGKKRELAHATGLTPTQVGNWFKNRRQRDRAAAAKNR 240 241 LQHHRICPDSACTLSGGDSSERADGDTFLSVTDSDSDLDV |
| Interface Residues: | 172, 178, 180, 181, 182, 183, 219, 220, 222, 223, 226, 227, 230, 231, 234 |
| 3D-footprint Homologues: | 6m3d_C, 4xrs_G, 5zfz_A, 8ejp_B, 1mnm_C, 2r5y_A, 1puf_B, 1k61_B, 1le8_B, 5jlw_D, 2ld5_A, 8osb_E, 4j19_B, 1le8_A, 7q3o_C, 2xsd_C, 1ig7_A, 7xrc_C, 4xrm_B, 3a01_E, 1jgg_B, 4cyc_A, 2lkx_A, 8bx1_A, 1du0_A, 6es3_K, 3cmy_A, 1zq3_P, 8pmf_A, 7psx_B, 1nk2_P, 1fjl_B, 6fqp_B, 5flv_I, 3lnq_A, 2hdd_A, 9b8u_A, 5zjt_E, 4qtr_D, 1puf_A, 8g87_X, 6fqq_E, 5hod_A, 3rkq_B, 1b72_A, 6a8r_A |
| Binding Motifs: | M1074_1.02 mtkAtmyccc |
| Related annotations: | PaperBLAST |
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