Transcription Factor

						

			
Accessions: T136824_1.02 (CISBP 1.02)

			
Names: ENSXETG00000014047, T136824_1.02;
Organisms: Xenopus (Silurana) tropicalis
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Pipsqueak
Length: 200
Pfam Domains:   118-161 helix-turn-helix, Psq domain
Sequence: 
(in bold interface residues)		   1 TVQNKHDIKKEMGLSSPVDLKIPQVRGMDLSWESRSGDLYNYNSLVMGSQTESALSKKLR   60
  61 TILPKQNRRSLLDTTADSWSSDVEQSTSGQPYPTSDQEGDPGSKQPRKKRGRYRQYNSEI  120
 121 LEEAIAVVMNGKMSVSKAQSIYGIPHSTLEYKVKERLGTLKNPPKKKMKLMKLEEQDAVK  180
 181 RELDPPDEVEVPQSTNESKD
Interface Residues: 141, 142, 151, 155
3D-footprint Homologues: 4iqj_A, 6cnb_R, 8jsi_A
Binding Motifs: M1510_1.02 rwwTTkGgv
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.