Transcription Factor

						

			
Accessions: T161790_1.02 (CISBP 1.02)

			
Names: NCU06971, T161790_1.02;
Organisms: Neurospora crassa
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Zinc cluster
Length: 944
Pfam Domains:    94-131 Fungal Zn(2)-Cys(6) binuclear cluster domain
  397-708 Fungal specific transcription factor domain 
Sequence: 
(in bold interface residues)		   1 MLSNPLHRFAPYHAMPSPTLLSGGHVTASHLHAAGLDTMGPGSHYALQQLQQHVSVHNHH   60
  61 LARAGPQPKHRQHPYGPVTRATGAAGPIRRRISRACDQCNQLRTKCDGQHPCAHCIEFGL  120
 121 GCEYIRERKKRGKASRKDLAAQAAAAAAAQLNGHKNPSQAGENDQSPPNRTESTTATKRA  180
 181 SSLPIEHQTTSNDKTMSDMSEGSVRSQRTGSMDSIDLGAHQTHIASHPGAMDRDLESPAA  240
 241 LDLSYGNVHQEYHRQGMGAHLMNGASHHTPYGSNQAAMSNYPDLPYALHTQSPTGYSANT  300
 301 SSGFRIGASPLSAYPMAGGSTSPGWMNLASPPPQFAQHIPQPTYSHAQLRYPVLEPLLPH  360
 361 LGNLMPVSLACDLIDLYFASSSSAQMHPMSPYVLGFVFRKRSFLHPTKPRQCQPALLASM  420
 421 LWVAAQTSDAPFLTSVPSARGKICQKLLELTVSLLKPLIHTPSEEPSPVSSPIVDGVALG  480
 481 GLGVALPGSISMDALTGETGAFGAAGTLDDVVTYIHLATVVSASEYKGASLRWWNAAWSL  540
 541 ARELKLGREIPQNSPSMQNSGSELDGEMGNIPGMITEEEREERRRIWWLVYIVDRHLALC  600
 601 YNRPLFLLDIECDGLLQPMDDTDYQNGNFYAYTDPNVLASDPNTPAARHRGPSFVCTGHS  660
 661 IFGYFLPLMTILGEIVDLHHARNHPRFGVGFRSSREWDDQTAEITRHLEIYEESIKRFEH  720
 721 RNLSLSAQAQAADEKAAEAAGVPTANDVPHDAGTPSVQSVHSVHTTSSRMTESDIQTRIV  780
 781 MAYGTHVMHVLHILLTGKWDPINLLDDNDLWISSQGFITATGHAVSAAEAISNILEYDPG  840
 841 LEFMPFFFGIYLLQGSFLLLLIADKLQVEASPSVVKACETIIRAHEACVVTLNTEYQRNF  900
 901 SRVMRSALAQVRGRVPEDLGEQHQRRRELLALYRWTGDGTGLAL
Interface Residues: 89, 90, 100, 102, 103, 104, 105, 117, 118, 129, 130, 131, 137, 432, 477, 660
3D-footprint Homologues: 1f5e_P, 2er8_C, 6o19_A, 1pyi_A, 1zme_D, 1d66_B, 3coq_A, 7uik_T, 5n8o_A, 3ket_A
Binding Motifs: M1754_1.02 wwwywkccg
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.