Transcription Factor
| Accessions: | T100359_1.02 (CISBP 1.02) |
| Names: | PRH, T100359_1.02; |
| Organisms: | Petroselinum crispum |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 1088 |
| Pfam Domains: | 580-635 PHD-finger 939-991 Homeobox domain 957-987 Homeobox KN domain |
| Sequence: (in bold interface residues) | 1 MEEISDPKPNALEQVLPTVPNGKCTAPVQMESLAVDVQKVSGEAKVRICSCWCEIVRSPE 60 61 DLTKLVPCNDFAEDIKLFDSDPMQQEAESSIGIPLIPKQVTMSHNHDHESGSEMVSNEVM 120 121 QENHVIATENTYQKSDFDRINMGQKETMPEEVIHKSFLESSTSSIDILLNNHNSYQSGLP 180 181 PENAVTDCKQVQLGHRSDDAIKNSGLVELVIGQKNVAKSPSQLVETGKRGRGRPRKVQTG 240 241 LEQLVIGQKTAAKSSSQLGDTGKRSRGRPRKVQNSPTSFLENINMEQKETIPEQVTQNSI 300 301 LESLTIPTDNQSRTYNSDQSELPPENAAKNCNHAQFGHQSDDTTKISGFKELVIGQETVA 360 361 KSPSQLVDAGKRGRGRPRKVQTGLEQLVPVQETAAKSSSQLGDTGKRSRGRPRKVQDSPT 420 421 SLGGNVKVVPEKGKDSQELSVNSSRSLRSRSQEKSIEPDVNNIVADEGADREKPRKKRKK 480 481 RMEENRVDEFCRIRTHLRYLLHRIKYEKNFLDAYSGEGWKGQSLDKIKPEKELKRAKAEI 540 541 FGRKLKIRDLFQRLDLARSEGRLPEILFDSRGEIDSEDIFCAKCGSKDVTLSNDIILCDG 600 601 ACDRGFHQFCLDPPLLKEYIPPDDEGWLCPGCECKIDCIKLLNDSQETNILLGDSWEKVF 660 661 AEEAAAAASGKNLDDNSGLPSDDSEDDDYDPGGPDLDEKVQGDDSSTDESDYQSESDDMQ 720 721 VIRQKNSRGLPSDDSEDDEYDPSGLVTDQMYKDSSCSDFTSDSEDFTGVFDDYKDTGKAQ 780 781 GPLASTPDHVRNNEEGCGHPEQGDTAPLYPRRQVESLDYKKLNDIEFSKMCDILDILSSQ 840 841 LDVIICTGNQEEYGNTSSDSSDEDYMVTSSPDKNNSDKEATAMERGRESGDLELDQKARE 900 901 STHNRRYIKKFAVEGTDSFLSRSCEDSAAPVAGSKSTSKTLHGEHATQRLLQSFKENQYP 960 961 QRAVKESLAAELALSVRQVSNWFNNRRWSFRHSSRIGSDVAKFDSNDTPRQKSIDMSGPS 1020 1021 LKSVLDSATYSEIEKKEQDTASLGLTEGCDRYMTLNMVADEGNVHTPCIAETREEKTEVG 1080 1081 IKPQQNPL |
| Interface Residues: | 286, 308, 932, 935, 936, 937, 938, 939, 942, 977, 978, 980, 981, 984, 985, 987, 988, 989, 990, 991, 992 |
| 3D-footprint Homologues: | 6ppr_B, 1mnm_C, 1puf_A, 1zq3_P, 1nk2_P, 2lkx_A, 7q3o_C, 6es3_K, 2hdd_A, 2r5y_A, 8osb_E, 6m3d_C, 5jlw_D, 3rkq_B, 2hos_A, 4xrs_G, 8pmf_A, 1fjl_B, 4cyc_A, 5flv_I, 3cmy_A, 1b72_A, 8ik5_C, 2ld5_A, 1ig7_A, 4j19_B, 6fqq_E, 5hod_A, 3lnq_A, 1jgg_B, 6a8r_A, 4xrm_B, 1puf_B, 1du0_A, 8ejp_B, 3a01_E, 5zfz_A, 8eml_B, 6fqp_B, 2d5v_B, 9b8u_A, 7psx_B, 5zjt_E |
| Binding Motifs: | M1167_1.02 ATATATwA |
| Related annotations: | PaperBLAST |
Disclaimer and license
These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.