Transcription Factor
| Accessions: | T000661_1.02 (CISBP 1.02), Q9SUK8 (JASPAR 2024), T19925 (AthalianaCistrome v4_May2016) |
| Names: | AT4G16750, T000661_1.02;, ERF39_ARATH, T19925; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | CISBP 1.02 1, JASPAR 2024 2, AthalianaCistrome v4_May2016 3 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 3 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | experiment type:PBM, family:AP2, ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:AP2-EREBP |
| Length: | 179 |
| Pfam Domains: | 39-88 AP2 domain |
| Sequence: (in bold interface residues) | 1 MQDSSSHESQRNLRSPVPEKTGKSSKTKNEQKGVSKQPNFRGVRMRQWGKWVSEIREPRK 60 61 KSRIWLGTFSTPEMAARAHDVAALAIKGGSAHLNFPELAYHLPRPASADPKDIQEAAAAA 120 121 AAVDWKAPESPSSTVTSSPVADDAFSDLPDLLLDVNDHNKNDGFWDSFPYEDPFFLENY |
| Interface Residues: | 37, 38, 44, 46, 48, 52, 54, 56, 61, 63, 65 |
| 3D-footprint Homologues: | 7et4_D, 5wx9_A, 7wq5_A, 1gcc_A |
| Binding Motifs: | M0026_1.02 rtGtCGGygr MA0995.1 rtGtCGGygr M0015 / MA1237.1 cdycdyCrCCGaCrm M0132 wkTGTCGGTGgmrdwdr MA0995.2 ycrCCGACAmh MA0995.3 rCCGACA |
| Binding Sites: | MA1237.1.1 MA1237.1.10 MA1237.1.11 MA1237.1.12 MA1237.1.13 MA1237.1.14 MA1237.1.15 MA1237.1.16 MA1237.1.17 MA1237.1.18 MA1237.1.19 MA1237.1.2 MA1237.1.20 MA1237.1.3 MA1237.1.4 MA1237.1.5 MA1237.1.6 MA1237.1.7 MA1237.1.8 MA1237.1.9 MA0995.2.1 MA0995.2.10 MA0995.2.11 MA0995.2.12 MA0995.2.13 MA0995.2.14 MA0995.2.15 MA0995.2.16 / MA0995.2.9 MA0995.2.17 MA0995.2.18 MA0995.2.19 MA0995.2.2 MA0995.2.20 MA0995.2.3 MA0995.2.4 MA0995.2.5 MA0995.2.6 MA0995.2.7 MA0995.2.8 MA0995.3.14 MA0995.3.11 / MA0995.3.18 / MA0995.3.19 / MA0995.3.2 / MA0995.3.5 MA0995.3.10 / MA0995.3.13 / MA0995.3.16 / MA0995.3.17 / MA0995.3.8 / MA0995.3.9 MA0995.3.1 MA0995.3.12 / MA0995.3.20 / MA0995.3.4 / MA0995.3.6 MA0995.3.15 MA0995.3.3 MA0995.3.7 |
| Publications: | Hao D., Ohme-Takagi M., Sarai A. Unique mode of GCC box recognition by the DNA-binding domain of ethylene-responsive element-binding factor (ERF domain) in plant. J. Biol. Chem. 273:26857-26861 (1998). [Pubmed] Magnani E, Sjölander K, Hake S. From endonucleases to transcription factors: evolution of the AP2 DNA binding domain in plants. Plant Cell 16:2265-77 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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