Transcription Factor

						

			
Accessions: T24928 (AthalianaCistrome v4_May2016)

			
Names: AT5G42820, T24928;, U2AF35B
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:C3H
Length: 283
Pfam Domains:     14-38 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
   83-139 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
  150-173 Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Sequence: 
(in bold interface residues)		   1 MAEHLASIFGTEKDRVNCPFYFKIGACRHGDRCSRLHNRPTISPTLLLSNMYQRPDMITP   60
  61 GVDPQGQPLDPSKIQDHFEDFYEDIFEELNKFGEVESLNVCDNLADHMIGNVYVLFKEED  120
 121 HAAAALQALQGRFYSGRPIIADFSPVTDFREATCRQYEENSCNRGGYCNFMHVKQISREL  180
 181 RRKLFGRYRRSYRRGSRSRSRSISPRRKREHSRERERGDVRDRDRHGNGKRSSDRSERHD  240
 241 RDGGGRRRHGSPKRSRSPRNVREGSEERRARIEQWNRERDEGV
Interface Residues: 115, 117, 135, 177, 178, 180, 182, 200, 203, 206, 209
3D-footprint Homologues: 2jlg_B, 6pax_A, 7xf1_A
Binding Motifs: M0347 tTGTTGA
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
Disclaimer and license


These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.