Transcription Factor

						

			
Accessions: 5jh0_D (3D-footprint 20231221)

			
Names: ABF2_YEAST, ARS-binding factor 2, mitochondrial
Organisms: Saccharomyces cerevisiae, Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
Libraries: 3D-footprint 20231221 1
1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed]
Uniprot: Q02486
Length: 157
Pfam Domains:     19-86 HMG (high mobility group) box
    19-81 Domain of unknown function (DUF1898)
   92-157 HMG (high mobility group) box
Sequence: 
(in bold interface residues)		   1 HHKASKRTQLRNELIKQGPKRPTSAYFLYLQDHRSQFVKENPTLRPAEISKIAGEKWQNL   60
  61 EADIKEKYISERKKLYSEYQKAKKEFDEKLPPKKPAGPFIKYANEVRSQVFAQHPDKSQL  120
 121 DLMKIIGDKWQSLDQSIKDKYIQEYKKAIQEYNARYP
Interface Residues: 21, 24, 26, 27, 30, 34, 45, 46, 47, 50, 81, 84, 94, 97, 99, 100, 103, 107, 118, 119, 120, 123
3D-footprint Homologues: 1j5n_A, 6jrp_D, 3u2b_C, 1o4x_B, 7m5w_A, 3f27_D, 4s2q_D, 1qrv_A, 4y60_C, 2gzk_A, 1hry_A, 1ckt_A, 2lef_A, 3tmm_A, 3tq6_B
Binding Motifs: 5jh0_AD AATAnnnnnnnATATAATAnnnAATAnnnnnnnnTATaAT
5jh0_D ATATaATAnnnAATA
			
Publications: Chakraborty A, Lyonnais S, Battistini F, Hospital A, Medici G, Prohens R, Orozco M, Vilardell J, Solà M. DNA structure directs positioning of the mitochondrial genome packaging protein Abf2p. Nucleic Acids Res 45:951-967 (2017). [Pubmed]
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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