Transcription Factor
| Accessions: | T060974_1.02 (CISBP 1.02) |
| Names: | NCU08159, T060974_1.02; |
| Organisms: | Neurospora crassa |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:C2H2 ZF |
| Length: | 672 |
| Sequence: (in bold interface residues) | 1 MAARAVPMQTQPRYTSAARDFDDGPLPSISSRDGGFREHFASRPFGIPLNDNLSPSTAST 60 61 PMAIHGSEGNGINAPPPLPPPRLAPVDGPVDPNVQHYRDSDFMRNDGPNSLESESFKFER 120 121 RALPNKHENPHDEGYQSFDSVRSSQLSSSFGLHAMKGFRPSTAAIDQTMLNRLNKSGGLS 180 181 NSLNDVHSSRPSHASLPQLSLPHRSKPGLFTSGFASSPTTASPLPSPFSQTGQPSPAIVG 240 241 FRPTDGFDNSGFNRAPPLRARRTKSTLMLDDGFLNTEDDEDNDFPMEETTRMRTLKIEDP 300 301 WRERQRENERETESGSWQRGHKSGPSHYSPSQLYHAGRDMGGDRSYYQSGQKRPASPTPI 360 361 DRCSDTSGLNRGSPTPRLTVVSQGSVSSLSAASRSGSYIGNLTASSIASNSSLGRLSPNG 420 421 VSPGGVSPTDVMGNGSPYATPISLTASPRSSISRTGAAQSPHPRISGDYTQRSVDQSNRT 480 481 LGISRKLAEIPKNASNIVAAKLKGPYMCECCPKKPKKFDTEEDLKLHEAEKQYGCSFCGN 540 541 RFKNKNEAERHQNSLHVRRHSWSCSALQTYDRAFHDSSTRPGEADTCGYCGEEFARTGRN 600 601 AAGIFASEQDWEDRIRHLQDVHKFRECNASKKFFRADHFRQHLKHSHAGTSGKWTNMLEN 660 661 ACMMDEGPAVPR |
| Interface Residues: | 489, 491, 492, 495, 514, 515, 516, 517, 518, 519, 520, 521, 522, 523, 524, 526, 543, 544, 545, 546, 547, 549, 550, 555, 565, 568, 569, 570, 571, 572, 574, 575, 596, 599, 609, 635, 636, 637, 638, 641 |
| 3D-footprint Homologues: | 6ml4_A, 8gn3_A, 2lt7_A, 1g2f_F, 5ei9_F, 1llm_D, 4x9j_A, 2kmk_A, 7ysf_A, 7y3l_A, 5yel_A, 1mey_C, 8h9h_G, 7n5w_A, 7y3m_I, 2i13_A, 6e94_A, 8cuc_F, 7eyi_G, 5yj3_D, 5kkq_D |
| Binding Motifs: | M0485_1.02 rTARGGCt |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.