Transcription Factor

						

			
Accessions: T19741 (AthalianaCistrome v4_May2016)

			
Names: ARF16, AT4G30080, T19741;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: DAP-seq, family:ARF
Length: 670
Pfam Domains:   120-221 B3 DNA binding domain
  279-362 Auxin response factor
  577-663 AUX/IAA family
Sequence: 
(in bold interface residues)		   1 MINVMNPMKGGTEKGLDPQLWHACAGGMVRMPPMNSKVFYFPQGHAENAYDCVDFGNLPI   60
  61 PPMVLCRVLAIKYMADAESDEVFAKLRLIPLKDDEYVDHEYGDGEDSNGFESNSEKTPSF  120
 121 AKTLTQSDANNGGGFSVPRYCAETIFPRLDYNAEPPVQTILAKDVHGDVWKFRHIYRGTP  180
 181 RRHLLTTGWSNFVNQKKLVAGDSIVFMRAENGDLCVGIRRAKRGGIGNGPEYSAGWNPIG  240
 241 GSCGYSSLLREDESNSLRRSNCSLADRKGKVTAESVIEAATLAISGRPFEVVYYPRASTS  300
 301 EFCVKALDARAAMRIPWCSGMRFKMAFETEDSSRISWFMGTVSAVNVSDPIRWPNSPWRL  360
 361 LQVAWDEPDLLQNVKRVNPWLVELVSNVHPIPLTSFSPPRKKMRLPQHPDYNNLINSIPV  420
 421 PSFPSNPLIRSSPLSSVLDNVPVGLQGARHNAHQYYGLSSSDLHHYYLNRPPPPPPPSSL  480
 481 QLSPSLGLRNIDTKNEKGFCFLTMGTTPCNDTKSKKSHIVLFGKLILPEEQLSEKGSTDT  540
 541 ANIEKTQISSGGSNQNGVAGREFSSSDEGSPCSKKVHDASGLETGHCKVFMESDDVGRTL  600
 601 DLSVLGSYEELSRKLSDMFGIKKSEMLSSVLYRDASGAIKYAGNEPFSEFLKTARRLTIL  660
 661 TEQGSESVVV
Interface Residues: 125, 127, 132, 133, 134, 136, 177, 178, 179, 180, 182, 183
3D-footprint Homologues: 6j9b_A, 6ycq_A, 6fas_B, 7et6_A, 6sdg_B
Binding Motifs: M0142 TTTACGkTTTTGGCGGrAAAA
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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