Transcription Factor

						

			
Accessions: T008691_1.02 (CISBP 1.02)

			
Names: PHF21A, T008691_1.02;
Organisms: Monodelphis domestica
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:AT hook
Length: 597
Pfam Domains:   373-383 AT hook motif
  438-482 PHD-finger
Sequence: 
(in bold interface residues)		   1 KRVVEQLRKNLIVKQEQPDKFQIQPFQLPPGLSNCSTLRARILHDFGGRGSSFLHLSSLA   60
  61 SEALDGYEKTVTTASMITTKTLPLVLKAATATMPASVVAQRPTIAMVTAINSQKAVLSPD  120
 121 VQSTPVNLQTSSKVPGPGAEAVQIVAKNTVTLVQATPPQPIKVPQFIPPPRLTPRPNFLP  180
 181 QVRPKPVAQNNIPIAPAPPPMLAAPQLIQRPVMLTKFTPTSLPTSQNSIHPVRVVNGQTA  240
 241 TIAKTFPMAQLTSIVIAAPGARLAGPQTVQLSKPSLEKQTIKSHTETEEKPAESRTITPP  300
 301 AAPKPKREENPQKLAFMVSLGLVTHDHLEEIQSKRQERKRRTTANPVYSGAVFEPERKKS  360
 361 AVTYLNSTMHPGTRKRGRPPKYNAVLGFGALTPASPPSSHPDSPENERTESTFTYPAPVQ  420
 421 PVSLPSPTSTDGDIHEDFCSVCRKSGQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPKC  480
 481 QDQMLKKEEAIPWPGTLAIVHSYIAYKAAKEEEKQKLLKWSSDLKQEREQLEQKVKQLSS  540
 541 SISKCMEMKNNILARQKEMHGSLEKVKQLIRLIHGIDLSKPMNSEAGLAAVPNGPDC
Interface Residues: 498, 499, 502, 503, 523, 527, 530
3D-footprint Homologues: 8k8c_A, 6cg0_A
Binding Motifs: M0129_1.02 raardwRw
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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