Transcription Factor
| Accessions: | TYY1_MOUSE (HOCOMOCO 10), Q00899 (JASPAR 2024) |
| Names: | Delta transcription factor, NF-E1, Transcriptional repressor protein YY1, TYY1_MOUSE, UCR-motif DNA-binding protein, Yin and yang 1, YY-1 |
| Organisms: | Mus musculus |
| Libraries: | HOCOMOCO 10 1, JASPAR 2024 2 1 Kulakovskiy IV, Vorontsov IE, Yevshin IS, Soboleva AV, Kasianov AS, Ashoor H, Ba-Alawi W, Bajic VB, Medvedeva YA, Kolpakov FA, Makeev VJ. HOCOMOCO: expansion and enhancement of the collection of transcription factor binding sites models. Nucleic Acids Res : (2016). [Pubmed] 2 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 414 |
| Pfam Domains: | 297-320 C2H2-type zinc finger 325-347 C2H2-type zinc finger 325-347 Zinc finger, C2H2 type 340-365 Zinc-finger double domain 353-377 C2H2-type zinc finger 353-377 Zinc finger, C2H2 type 369-395 Zinc-finger double domain 383-407 C2H2-type zinc finger 383-407 Zinc finger, C2H2 type |
| Sequence: (in bold interface residues) | 1 MASGDTLYIATDGSEMPAEIVELHEIEVETIPVETIETTVVGEEEEEDDDDEDGGGGDHG 60 61 GGGGGHGHAGHHHHHHHHHHHHPPMIALQPLVTDDPTQVHHHQEVILVQTREEVVGGDDS 120 121 DGLRAEDGFEDQILIPVPAPAGGDDDYIEQTLVTVAAAGKSGGGASSGGGRVKKGGGKKS 180 181 GKKSYLGGGAGAAGGGGADPGNKKWEQKQVQIKTLEGEFSVTMWSSDEKKDIDHETVVEE 240 241 QIIGENSPPDYSEYMTGKKLPPGGIPGIDLSDPKQLAEFARMKPRKIKEDDAPRTIACPH 300 301 KGCTKMFRDNSAMRKHLHTHGPRVHVCAECGKAFVESSKLKRHQLVHTGEKPFQCTFEGC 360 361 GKRFSLDFNLRTHVRIHTGDRPYVCPFDGCNKKFAQSTNLKSHILTHAKAKNNQ |
| Interface Residues: | 274, 275, 278, 308, 309, 310, 311, 312, 314, 315, 316, 317, 318, 335, 336, 337, 338, 339, 340, 341, 342, 343, 344, 347, 361, 364, 365, 366, 367, 368, 369, 371, 372, 376, 393, 395, 396, 397, 398, 399, 400, 401, 402 |
| 3D-footprint Homologues: | 2i13_A, 7w1m_H, 6wmi_A, 5ei9_F, 6ml4_A, 8gn3_A, 7eyi_G, 4m9v_C, 6e94_A, 7ysf_A, 2jpa_A, 1ubd_C, 8ssq_A, 8ssu_A, 5kkq_D, 1tf3_A, 6jnm_A, 8cuc_F, 7y3l_A, 7n5w_A, 4x9j_A, 7txc_E, 1mey_C, 5kl3_A, 2kmk_A, 5und_A, 2gli_A, 1tf6_A, 6blw_A, 8h9h_G, 7y3m_I, 2lt7_A, 6a57_A, 4gnx_Z, 5k5i_A, 3uk3_C, 2wbs_A, 6u9q_A, 5yel_A, 2drp_D, 1f2i_J, 5yj3_D, 1g2f_F, 5v3j_F, 1llm_D |
| Binding Motifs: | TYY1_MOUSE.H10MO.A|M01403 cAArATGGCggc MA0095.3 wmCAAAATGGck MA0095.4 CAAAATGG |
| Binding Sites: | MA0095.3.1 MA0095.3.10 / MA0095.3.13 MA0095.3.11 / MA0095.3.15 MA0095.3.12 / MA0095.3.16 MA0095.3.13 / MA0095.3.18 MA0095.3.14 / MA0095.3.20 MA0095.3.15 MA0095.3.16 MA0095.3.17 MA0095.3.18 MA0095.3.19 MA0095.3.2 / MA0095.3.3 MA0095.3.20 MA0095.3.3 / MA0095.3.4 MA0095.3.4 / MA0095.3.6 MA0095.3.5 / MA0095.3.7 MA0095.3.6 MA0095.3.7 / MA0095.3.9 MA0095.3.10 / MA0095.3.8 MA0095.3.11 / MA0095.3.9 MA0095.4.13 MA0095.3.12 MA0095.3.14 MA0095.3.17 MA0095.3.19 MA0095.3.2 MA0095.3.5 MA0095.3.8 MA0095.4.1 / MA0095.4.5 / MA0095.4.6 / MA0095.4.9 MA0095.4.10 / MA0095.4.11 / MA0095.4.2 / MA0095.4.4 MA0095.4.12 MA0095.4.14 / MA0095.4.3 MA0095.4.15 / MA0095.4.8 MA0095.4.16 / MA0095.4.20 MA0095.4.17 MA0095.4.18 MA0095.4.19 MA0095.4.7 |
| Publications: | Kim J., Kim J. YY1's longer DNA-binding motifs.. Genomics 93:152-158 (2009). [Pubmed] |
| Related annotations: | PaperBLAST |
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