Transcription Factor
| Accessions: | T086173_1.02 (CISBP 1.02) |
| Names: | fgenesh1_pg.C_Chr_07.0001000042, T086173_1.02; |
| Organisms: | Ostreococcus tauri |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:GATA |
| Length: | 201 |
| Pfam Domains: | 80-112 GATA zinc finger |
| Sequence: (in bold interface residues) | 1 MIMAQYAAYAAYARAQTQHVVGFGVPGFGGVGFGGGYPYGVAAYEATSAARGNGARGRGG 60 61 EKLGKVRRAKPMKSKVPKVCVNCKSTETPFWRKDKGGGGSLCNACGLYLAKNDAPRPAQL 120 121 WRRQETSASEIDTNNDTNDSEKTTEGVPSASVEGEKNSPEKDSESDGGAETTNEKPSEES 180 181 PRDERVTENALKLDVKAGAAE |
| Interface Residues: | 89, 90, 92, 103, 107, 108, 111, 119, 120, 122 |
| 3D-footprint Homologues: | 1gat_A, 4hc9_A, 3dfx_B, 3vd6_C, 4gat_A |
| Binding Motifs: | M0808_1.02 rgATCwywww |
| Related annotations: | PaperBLAST |
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