Transcription Factor
Accessions: | 5v3j_F (3D-footprint 20231221) |
Names: | Zinc finger protein 568, ZN568_MOUSE |
Organisms: | Mus musculus |
Libraries: | 3D-footprint 20231221 1 1 Contreras-Moreira B. 3D-footprint: a database for the structural analysis of protein-DNA complexes. Nucleic acids research 38:D91-7 (2010). [Pubmed] |
Length: | 278 |
Pfam Domains: | 1-17 C2H2-type zinc finger 2-24 Zinc finger, C2H2 type 2-24 C2H2-type zinc finger 17-39 Zinc-finger double domain 29-41 C2H2-type zinc finger 30-52 Zinc finger, C2H2 type 30-52 C2H2-type zinc finger 45-67 Zinc-finger double domain 58-80 C2H2-type zinc finger 58-69 C2H2-type zinc finger 58-80 Zinc finger, C2H2 type 72-96 Zinc-finger double domain 85-96 C2H2-type zinc finger 86-108 C2H2-type zinc finger 86-108 Zinc finger, C2H2 type 101-125 Zinc-finger double domain 114-136 C2H2-type zinc finger 114-124 C2H2-type zinc finger 114-136 Zinc finger, C2H2 type 131-151 Zinc-finger double domain 141-151 C2H2-type zinc finger 142-164 Zinc finger, C2H2 type 142-164 C2H2-type zinc finger 156-180 Zinc-finger double domain 169-192 C2H2-type zinc finger 170-192 Zinc finger, C2H2 type 170-192 C2H2-type zinc finger 185-209 Zinc-finger double domain 197-220 C2H2-type zinc finger 198-220 Zinc finger, C2H2 type 198-220 C2H2-type zinc finger 213-235 Zinc-finger double domain 225-248 C2H2-type zinc finger 226-248 Zinc finger, C2H2 type 226-248 C2H2-type zinc finger 241-264 Zinc-finger double domain 253-274 C2H2-type zinc finger 254-276 Zinc finger, C2H2 type 254-276 C2H2-type zinc finger |
Sequence: (in bold interface residues) | 1 PHKCKECGKAFHTPSQLSHHQKLHVGEKPYKCQECGKAFPSNAQLSLHHRVHTDEKCFEC 60 61 KECGKAFMRPSHLLRHQRIHTGEKPHKCKECGKAFRYDTQLSLHLLTHAGARRFECKDCD 120 121 KVYSCASQLALHQMSHTGEKPHKCKECGKGFISDSHLLRHQSVHTGETPYKCKECGKGFR 180 181 RGSELARHQRAHSGDKPYKCKECGKSFTCTTELFRHQKVHTGDRPHKCKECGKAFIRRSE 240 241 LTHHERSHSGEKPYECKECGKTFGRGSELSRHQKIHTG |
Interface Residues: | 12, 13, 15, 16, 19, 23, 40, 41, 42, 43, 44, 47, 51, 68, 69, 70, 71, 72, 75, 97, 98, 99, 100, 101, 102, 103, 125, 127, 128, 131, 152, 153, 154, 155, 156, 159, 170, 180, 181, 182, 183, 184, 186, 187, 188, 189, 190, 193, 207, 208, 209, 210, 211, 212, 213, 214, 215, 216, 219, 224, 236, 237, 238, 239, 240, 241, 242, 243, 264, 265, 266, 267, 268, 270, 271 |
3D-footprint Homologues: | 7w1m_H, 8cuc_F, 7y3l_A, 5kkq_D, 8ssq_A, 8ssu_A, 7y3m_I, 1tf3_A, 5und_A, 3uk3_C, 5yj3_D, 5v3j_F, 8gn3_A, 5yel_A, 2i13_A, 6u9q_A, 7ysf_A, 1ubd_C, 6blw_A, 5ei9_F, 6wmi_A, 1tf6_A, 2kmk_A, 5k5i_A, 2gli_A, 6ml4_A, 4m9v_C, 7eyi_G, 6e94_A, 2jpa_A, 7n5w_A, 6jnm_A, 1mey_C, 5kl3_A, 1g2f_F, 4x9j_A, 8h9h_G, 2lt7_A, 6a57_A, 1llm_D, 2wbs_A, 7txc_E, 2drp_D, 1f2i_J, 5k5l_F |
Binding Motifs: | 5v3j_F GGCGTGGCACAGGTAAAAAGGGC |
Binding Sites: | 5v3j_C 5v3j_D |
Publications: | Patel A, Yang P, Tinkham M, Pradhan M, Sun MA, Wang Y, Hoang D, Wolf G, Horton JR, Zhang X, Macfarlan T, Cheng X. DNA Conformation Induces Adaptable Binding by Tandem Zinc Finger Proteins. Cell 173:221-233 (2018). [Pubmed] |
Related annotations: | PaperBLAST |
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