Transcription Factor
| Accessions: | T146180_1.02 (CISBP 1.02) |
| Names: | matmc_2, T146180_1.02; |
| Organisms: | Schizosaccharomyces pombe |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | family:Sox |
| Length: | 181 |
| Pfam Domains: | 104-171 HMG (high mobility group) box 104-164 Domain of unknown function (DUF1898) |
| Sequence: (in bold interface residues) | 1 MDSHQELSAGSPISYDFLDPDWCFKRYLTKDALHSIETGKGAAYFVPDGFTPILIPNSQS 60 61 YLLDGNSAQLPRPQPISFTLDQCKVPGYILKSLRKDTTSTERTPRPPNAFILYRKEKHAT 120 121 LLKSNPSINNSQVSKLVGEMWRNESKEVRMRYFKMSEFYKAQHQKMYPGYKYQPRKNKVK 180 181 R |
| Interface Residues: | 105, 108, 110, 111, 114, 118, 129, 130, 131, 134, 172, 174, 176, 179 |
| 3D-footprint Homologues: | 2gzk_A, 4s2q_D, 1j5n_A, 2lef_A, 4y60_C, 1o4x_B, 3f27_D, 6jrp_D, 1qrv_A, 3u2b_C, 7m5w_A, 1hry_A, 1ckt_A |
| Binding Motifs: | M2458_1.02 trmycAACAAAGAvrymt |
| Related annotations: | PaperBLAST |
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