Transcription Factor

						

			
Accessions: T05453 (AthalianaCistrome v4_May2016)

			
Names: AT1G33240, GTL1, T05453;
Organisms: Arabidopsis thaliana
Libraries: AthalianaCistrome v4_May2016 1
1 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed]
Notes: ecotype:Col-0, experiment type: ampDAP-seq, experiment type: ampDAP-seq (methyl-cytosines removed by PCR), experiment type: DAP-seq, family:Trihelix
Length: 669
Pfam Domains:    61-147 Myb/SANT-like DNA-binding domain
  434-519 Myb/SANT-like DNA-binding domain
  458-497 Myb/SANT-like DNA-binding domain
Sequence: 
(in bold interface residues)		   1 MEQGGGGGGNEVVEEASPISSRPPANNLEELMRFSAAADDGGLGGGGGGGGGGSASSSSG   60
  61 NRWPREETLALLRIRSDMDSTFRDATLKAPLWEHVSRKLLELGYKRSSKKCKEKFENVQK  120
 121 YYKRTKETRGGRHDGKAYKFFSQLEALNTTPPSSSLDVTPLSVANPILMPSSSSSPFPVF  180
 181 SQPQPQTQTQPPQTHNVSFTPTPPPLPLPSMGPIFTGVTFSSHSSSTASGMGSDDDDDDM  240
 241 DVDQANIAGSSSRKRKRGNRGGGGKMMELFEGLVRQVMQKQAAMQRSFLEALEKREQERL  300
 301 DREEAWKRQEMARLAREHEVMSQERAASASRDAAIISLIQKITGHTIQLPPSLSSQPPPP  360
 361 YQPPPAVTKRVAEPPLSTAQSQSQQPIMAIPQQQILPPPPPSHPHAHQPEQKQQQQPQQE  420
 421 MVMSSEQSSLPSSSRWPKAEILALINLRSGMEPRYQDNVPKGLLWEEISTSMKRMGYNRN  480
 481 AKRCKEKWENINKYYKKVKESNKKRPQDAKTCPYFHRLDLLYRNKVLGSGGGSSTSGLPQ  540
 541 DQKQSPVTAMKPPQEGLVNVQQTHGSASTEEEEPIEESPQGTEKPEDLVMRELIQQQQQL  600
 601 QQQESMIGEYEKIEESHNYNNMEEEEDQEMDEEELDEDEKSAAFEIAFQSPANRGGNGHT  660
 661 EPPFLTMVQ
Interface Residues: 482, 485, 486
3D-footprint Homologues: 3osg_A
Binding Motifs: M0769 ayRGTAAAww
M0771 ayrGTAAAWa
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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