Transcription Factor

						

			
Accessions: T091075_1.02 (CISBP 1.02)

			
Names: hbx9, T091075_1.02;
Organisms: Dictyostelium discoideum
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 639
Pfam Domains:   577-616 Homeobox KN domain
Sequence: 
(in bold interface residues)		   1 MLNSYSPLQSPSSSITLPPLFHINNNNNNNNNNNNNNGHNNDKQNVNKLGLKLNINGYDS   60
  61 GFSPFSPNHSIANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNIQSPKNNNSNNNK  120
 121 LNESCGSLNSSNDNNFNSGNDDNSLKRVRVFSNQNQNQNQNQNQNQNQNQNQNQNQNQNQ  180
 181 KDSWNIHFGEIVNIVLELESVLSCKNENINQINQIKSSEKSMRSALYKKEIEILELKDKL  240
 241 NNSSATFNSLKVIQPIKLEKSPRTLNNSSDSISENINNNNNNNNNNNNNNNNNINESNIN  300
 301 TSPTHELSGSSGTLGGYSKSHILSILDDLDSESSNISSDSEDDEQPRKVPRDLNYKPNNN  360
 361 INYANNNNNNNNNNNNNNHNNNINNNNNNNNNNNNNSNNYHHSIGSITNSVNIKPSKDQT  420
 421 SNDWAAATEALLNLHTNKNNNNNNNNNNNNNNNYHSNNNNYSNSPNTTPPYQNSNQQFNN  480
 481 NQPQSQQQQQSQQQQQQQQQYQNSINKNITTTTNNNNNNLTSSSNNQAVVYGNTSPNQSS  540
 541 ANGNNENVIGVPFTGSIVKRKKRGKLPGEATSILKKWLFEHNMHPYPTEEEKVALANSTF  600
 601 LSFNQINNWFTNARRRILPRQLDRKVFGSPLFSHFSITK
Interface Residues: 560, 562, 563, 608, 611, 612, 615, 616
3D-footprint Homologues: 6fqp_B, 1puf_B, 6fqq_E, 4xrm_B
Binding Motifs: M0877_1.02 wwTGACAy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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