Transcription Factor

						

			
Accessions: T102569_1.02 (CISBP 1.02)

			
Names: Q1T448, T102569_1.02;
Organisms: Medicago truncatula
Libraries: CISBP 1.02 1
1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed]
Notes: experiment type:PBM, family:Homeodomain
Length: 707
Pfam Domains:   227-282 PHD-finger
  485-533 Homeobox domain
Sequence: 
(in bold interface residues)		   1 MRDTERLNNQGSTKPSNTKEHIKLKVDSPQFKTSSTKHQRKKHRLKSKSHKLGGCTNASV   60
  61 RTATDSSNKASTKDSSNKTDRNSTQVQPSKKIQGGKTSLNNDRKGEKDVVDQEGNIQKRK  120
 121 RRRKKKRQRHNVDLDDTVRLQRRTRNILIRMKQEQNLIDAYAGEGWKGQSREKIRPEMEL  180
 181 QRAKKQILKCKLSIRDAIHQLDSLSSVGSIEGSVIATDGSVSHEHIFCANCKINEVSPDN  240
 241 DIILCDGTCNRAFHQRCLDPPLETEDIPPEDQGWFCKYCDCKIEILEATNAHLGTRFPLD  300
 301 STWQDVFKEEAAIPDGDAALLNQEEEWPSDDPEDDDYNPERKEESHGGFNTEGNDKNASD  360
 361 DSSSSSSMWSLNGECSLLDEGINLEYYSNDHIDSDESGEIACGRRQRRAVDYKKLYDEMF  420
 421 GKDAPPCEQVSEDEDWGPRKRRRREKESEAVNTLMTLHESENKYPNNKNNDRIRGNSSGI  480
 481 KRPCFRFSHEAVEKLRQVFAENELPPKSVKDALSKELGLDAAKVNKWFKNARYMALKIRK  540
 541 LQEGGQQLQSITSKTSKDSTSQHVQEDEVLNPKSAKITVISSLKKCENVTGKEKTKASSN  600
 601 PLKKKRPEIPPCLGENGNKDSMEVSDDVSLMKLLQDRKKKVSFAFEGDSEAAELEFERLS  660
 661 KVKTKIDRLKQRLTGVQNCRSKGSDEVHLNEPSIMYVPIAELREKVK
Interface Residues: 482, 484, 525, 526, 529, 530, 533, 534
3D-footprint Homologues: 6m3d_C, 5hod_A, 2d5v_B, 5flv_I, 3rkq_B, 8osb_E, 4qtr_D, 1du0_A, 6fqp_B, 3d1n_M, 9b8u_A, 4xrm_B, 6fqq_E, 3lnq_A, 2hdd_A, 2hos_A
Binding Motifs: M1215_1.02 hywttAgtmy
			
Related annotations: PaperBLAST

	
			


			

				

				
				
				
				

			

			

		

	
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.