Transcription Factor
| Accessions: | P41935 (JASPAR 2024) |
| Names: | HM10_CAEEL |
| Organisms: | Caenorhabditis elegans |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Length: | 344 |
| Pfam Domains: | 137-193 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MAVDEMQLAASMQMSNQMSNSQRMSFAIHEILGIQGNAYLSHGYCPQGTFLSNQPNFMDI 60 61 GSCGVSGFDRQLCGTDSIGNAPAPLMYRMPISTSEVITSEPQTHVSSSSILSSATTSNSS 120 121 GGGSSGGGGKASKRKKRRHRTIFTQYQIDELEKAFQDSHYPDIYAREVLAGKTELQEDRI 180 181 QVWFQNRRAKWRKTEKTWGKSTIMAEYGLYGAMVRHSLPLPETITKSAEAADPQQSAAPW 240 241 LLGMHKKSMEAAAHLESVEKCDMSDSDDDDRPVTPPVQRQVKNEYKPRIIEHVQQQAPQH 300 301 QSSLNFDTSLVVSSSLSQLHFQDSQMIPNNNASLKLYHDYNNPM |
| Interface Residues: | 135, 137, 138, 139, 140, 178, 179, 181, 182, 185, 186, 189, 190, 193 |
| 3D-footprint Homologues: | 3d1n_M, 1puf_B, 1fjl_B, 6a8r_A, 2h1k_B, 1ig7_A, 1puf_A, 3cmy_A, 5zfz_A, 6m3d_C, 1nk2_P, 1zq3_P, 3lnq_A, 2lkx_A, 1jgg_B, 2ld5_A, 7q3o_C, 6es3_K, 2r5y_A, 5flv_I, 2hos_A, 5zjt_E, 1au7_A, 4cyc_A, 7psx_B, 5hod_A, 3l1p_A, 1b72_A, 3a01_E, 5jlw_D, 4xrs_G, 2hdd_A, 3rkq_B, 1e3o_C, 2xsd_C, 7xrc_C, 8g87_X, 1o4x_A, 4qtr_D, 1du0_A |
| Binding Motifs: | MA0263.1 ATTRGyTTmGTTAr MA2179.1 wtkhwAATTwT |
| Publications: | Svendsen P. C., McGhee J. D. The C. elegans neuronally expressed homeobox gene ceh-10 is closely related to genes expressed in the vertebrate eye. Development 121:1253-1262 (1995). [Pubmed] Wenick A.S, Hobert O. Genomic cis-regulatory architecture and trans-acting regulators of a single interneuron-specific gene battery in C. elegans. Developmental cell 6:757-70 (2004). [Pubmed] |
| Related annotations: | PaperBLAST |
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