Transcription Factor
| Accessions: | MdSVPa (EEADannot 2023-12-22) |
| Names: | MD01G1038600 |
| Organisms: | Malus x domestica |
| Libraries: | EEADannot 2023-12-22 1 1 Contreras-Moreira B, Sebastian A. FootprintDB: Analysis of Plant Cis-Regulatory Elements, Transcription Factors, and Binding Interfaces. Methods Mol Biol 1482:259-77 (2016) [Pubmed] |
| Notes: | family:MADS-box |
| Length: | 227 |
| Pfam Domains: | 9-59 SRF-type transcription factor (DNA-binding and dimerisation domain) 91-173 K-box region |
| Sequence: (in bold interface residues) | 1 MAREKIQIKKIDNATARQVTFSKRRRGLLKKAEELSVLCDADIALIIFSSTGKLFEYASS 60 61 SMKEILERHNLHSKNLEKLEQPSLQLQLVENSNYTRLSKEIAAKSHQLRQMRGEEIQGLN 120 121 LEELQQLEKSLETGLGRVIEKKSEKIMKEIGDLQRNGMQLMEENERLRQQVAEKSDGRRL 180 181 VQVDSENMFTEEGQSSESVTNPCNSNNGPQDYDSSDTSLKLGLPYSG |
| Interface Residues: | 3, 4, 15, 18, 19, 23 |
| 3D-footprint Homologues: | 1hbx_A, 1n6j_A, 1c7u_A, 7x1n_C, 1mnm_A |
| Binding Motifs: | EEAD0054 TyAAATTGGATT EEAD0055 CCaArWATrGAAACT |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.