Transcription Factor
| Accessions: | O64722 (JASPAR 2024) |
| Names: | AtHB-21, AtZHD3, Homeobox protein 21, ZHD3_ARATH, Zinc finger homeodomain transcription factor 4, Zinc-finger homeodomain protein 3 |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] |
| Uniprot: | O64722 |
| Length: | 310 |
| Pfam Domains: | 85-140 ZF-HD protein dimerisation region |
| Sequence: (in bold interface residues) | 1 MEIASQEDPIPINTSYGNSGGGHGNMNHHHHANSAPSSLNITTSNPLLVSSNSNGLGKNH 60 61 DHSHHHHVGYNIMVTNIKKEKPVVIKYKECLKNHAATMGGNAIDGCGEFMPSGEEGSIEA 120 121 LTCSVCNCHRNFHRRETEGEEKTFFSPYLNHHQPPPQQRKLMFHHKMIKSPLPQQMIMPI 180 181 GVTTAGSNSESEDLMEEEGGGSLTFRQPPPPPSPYSYGHNQKKRFRTKFTQEQKEKMISF 240 241 AERVGWKIQRQEESVVQQLCQEIGIRRRVLKVWMHNNKQNLSKKSNNVSNNVDLSAGNND 300 301 ITENLASTNP |
| Interface Residues: | 224, 226, 272, 275, 276, 280 |
| 3D-footprint Homologues: | 3lnq_A, 5hod_A, 2hdd_A, 2hos_A, 1du0_A |
| Binding Motifs: | MA1213.2 wwCAATTATTGdw MA1213.3 CAATTATTG |
| Binding Sites: | MA1213.2.2 MA1213.2.3 MA1213.2.10 MA1213.2.11 MA1213.2.17 MA1213.2.18 MA1213.2.1 MA1213.2.12 MA1213.2.13 MA1213.2.14 MA1213.2.15 MA1213.2.16 MA1213.2.19 MA1213.2.20 MA1213.2.4 MA1213.2.5 MA1213.2.6 MA1213.2.7 MA1213.2.8 MA1213.2.9 MA1213.3.12 / MA1213.3.16 / MA1213.3.17 / MA1213.3.19 / MA1213.3.2 / MA1213.3.7 / MA1213.3.9 MA1213.3.13 / MA1213.3.15 / MA1213.3.18 / MA1213.3.20 / MA1213.3.3 / MA1213.3.6 / MA1213.3.8 MA1213.3.10 MA1213.3.11 MA1213.3.1 MA1213.3.14 MA1213.3.4 MA1213.3.5 |
| Publications: | Johannesson H., Wang Y., Engstrom P. DNA-binding and dimerization preferences of Arabidopsis homeodomain-leucine zipper transcription factors in vitro. Plant Mol. Biol. 45:63-73 (2001). [Pubmed] |
| Related annotations: | PaperBLAST |
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