Transcription Factor
| Accessions: | T090451_1.02 (CISBP 1.02) |
| Names: | C07E3.6, T090451_1.02; |
| Organisms: | Caenorhabditis elegans |
| Libraries: | CISBP 1.02 1 1 Weirauch MT, Yang A, Albu M, Cote AG, Montenegro-Montero A, Drewe P, Najafabadi HS, Lambert SA, Mann I, Cook K, Zheng H, Goity A, van Bakel H, Lozano JC, Galli M, Lewsey MG, Huang E, Mukherjee T, Chen X, Reece-Hoyes JS, Govindarajan S, Shaulsky G, et al. Determination and inference of eukaryotic transcription factor sequence specificity. Cell. 2014 Sep 11;158(6):1431-43. doi: 10.1016/j.cell.2014.08.009. [Pubmed] |
| Notes: | experiment type:PBM, family:Homeodomain |
| Length: | 327 |
| Pfam Domains: | 250-307 Homeobox domain |
| Sequence: (in bold interface residues) | 1 MSAFQGNMFVLVNVDQHRDLIGPIINQLVADYGTPVSIVDNIQKICPKCSCTPHANPDSS 60 61 SVPTTTSSDEHQEEPPTPKTIAPAPIATPVLKPLLPQRESIVSNGIHPVVVKRKQSIAEE 120 121 IDTPEIKKSRVVEPVKVKTETIILDDDDGNVLDTVLAALQNGNHEMQFTGSGGSSDDGAS 180 181 NSSNIYDVDDEDYGTSQWNPDFLTNFITSQPNIFSVTGQNIKSSPSKNAGQTPNGKRQVP 240 241 PMLTVNGKTRRGRIVYSTQELNILEKYYEEDPNACADPRKRETMCKTLSIDYHRLKVWFQ 300 301 NRRRKDKVRSQEEAATTFNGLDYSEDS |
| Interface Residues: | 250, 251, 252, 253, 293, 294, 296, 297, 300, 301, 303, 304, 305, 309 |
| 3D-footprint Homologues: | 3cmy_A, 5zfz_A, 1puf_A, 1fjl_B, 3d1n_M, 8ejp_B, 4j19_B, 8pmf_A, 1ig7_A, 6a8r_A, 6m3d_C, 3lnq_A, 1zq3_P, 1jgg_B, 2lkx_A, 1nk2_P, 2ld5_A, 2hdd_A, 4cyc_A, 8osb_E, 5flv_I, 2hos_A, 1b72_A, 1puf_B, 7psx_B, 5hod_A, 8eml_B, 9b8u_A, 7q3o_C, 5jlw_D, 3rkq_B, 8ik5_C, 6es3_K, 4xrs_G, 7xrc_C, 1au7_A, 2xsd_C, 1e3o_C, 1k61_B, 2r5y_A, 1le8_B, 5zjt_E, 1mnm_C, 1du0_A, 4qtr_D, 3a01_E |
| Binding Motifs: | M0857_1.02 rsyAATTAws |
| Related annotations: | PaperBLAST |
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