Transcription Factor
| Accessions: | Q9SG86 (JASPAR 2024), T14739 (AthalianaCistrome v4_May2016) |
| Names: | AtbZIP28, bZIP transcription factor 28, BZP28_ARATH, AT3G10800, bZIP28, T14739; |
| Organisms: | Arabidopsis thaliana |
| Libraries: | JASPAR 2024 1, AthalianaCistrome v4_May2016 2 1 Rauluseviciute I, Riudavets-Puig R, Blanc-Mathieu R, Castro-Mondragon JA, Ferenc K, Kumar V, Lemma RB, Lucas J, Cheneby J, Baranasic D, Khan A, Fornes O, Gundersen S, Johansen M, Hovig E, Lenhard B, Sandelin A, Wasserman WW, Parcy F, Mathelier A. JASPAR 2024: 20th anniversary of the open-access database of transcription factor binding profiles. Nucleic Acids Res : (2023). [Pubmed] 2 O'Malley RC, Huang SS, Song L, Lewsey MG, Bartlett A, Nery JR, Galli M, Gallavotti A, Ecker JR. Cistrome and Epicistrome Features Shape the Regulatory DNA Landscape. Cell 165:1280-92 (2016). [Pubmed] |
| Notes: | ecotype:Col-0, experiment type: DAP-seq, family:bZIP |
| Length: | 675 |
| Pfam Domains: | 189-237 Basic region leucine zipper 192-237 bZIP transcription factor |
| Sequence: (in bold interface residues) | 1 MTESTSVVAPPPEIPNLNPSMFSESDLFSIPPLDPLFLSDSDPISMDAPISDLDFLLDDE 60 61 NGDFADFDFSFDNSDDFFDFDLSEPAVVIPEEIGNNRSNLDSSENRSGDGGLEGRSESVH 120 121 SQVSSQGSKTFVSDTVDASSSPESSNHQKSSVSKRKKENGDSSGELRSCKYQKSDDKSVA 180 181 TNNEGDDDDDKRKLIRQIRNRESAQLSRLRKKQQTEELERKVKSMNATIAELNGKIAYVM 240 241 AENVALRQQMAVASGAPPMNPYMAAPPLPYQWMPYPPYPVRGYGSQTPLVPIPKLNPKPV 300 301 SSCRPKKAESKKNEGKSKLKKVASISFIGILFFVFLFGTLVPFMNVNFGGERGSFGGLSK 360 361 YDGHRYYDEHKGRVLMVGDGSDVRRNSGISEGNIHSSRISHGERDSCGGVDYNAHPKVEG 420 421 RPSSLSNASDPLFASLYVPRNDGLVKIDGNLIIHSVLASEKARGLGKKNITETVKTKEPD 480 481 LTIPGALSSALAVPGVRGNAAMLPHSTALSSEGKRLHQWFHEGGSGPLMDYSMCTEVFQF 540 541 DIAPGAIVPSSVSSISAEHLQNVTTHGKRMKNRRILEGLPVSLVASELNITGTQPNKDAQ 600 601 NKTFNGNTNKPTSSSSMVVSVLLDPREVVDSETDRVVPPNPKSLSRIFVVVLLDSVKYVT 660 661 YSCVLPRSGLHLVAT |
| Interface Residues: | 196, 200, 201, 203, 204, 207, 208 |
| 3D-footprint Homologues: | 7x5e_E, 5t01_B, 5vpe_D, 1dh3_C |
| Binding Motifs: | M0220 / MA1344.1 dwwgrtsACGTGKCa MA1344.2 tsACGTGKCa |
| Binding Sites: | MA1344.1.10 MA1344.1.11 / MA1344.1.4 MA1344.1.3 MA1344.1.7 MA1344.1.5 MA1344.1.1 MA1344.1.12 MA1344.1.13 / MA1344.1.19 MA1344.1.14 MA1344.1.15 MA1344.1.16 MA1344.1.17 MA1344.1.18 MA1344.1.2 MA1344.1.20 MA1344.1.6 MA1344.1.8 MA1344.1.9 MA1344.2.1 MA1344.2.10 MA1344.2.11 / MA1344.2.4 MA1344.2.12 MA1344.2.13 / MA1344.2.19 MA1344.2.14 MA1344.2.15 MA1344.2.16 MA1344.2.17 MA1344.2.18 MA1344.2.2 MA1344.2.20 MA1344.2.3 MA1344.2.5 MA1344.2.6 MA1344.2.7 MA1344.2.8 MA1344.2.9 |
| Publications: | Izawa T., Foster R., Chua N.-H. Plant bZIP protein DNA binding specificity.. J. Mol. Biol. 230:1131-1144 (1993). [Pubmed] |
| Related annotations: | PaperBLAST |
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These data are available AS IS and at your own risk. The EEAD/CSIC do not give any representation or warranty nor assume any liability or responsibility for the data nor the results posted (whether as to their accuracy, completeness, quality or otherwise). Access to these data is available free of charge for ordinary use in the course of research. Downloaded data have CC-BY-NC-SA license. FootprintDB is also available at RSAT::Plants, part of the INB/ELIXIR-ES resources portfolio.